RNA id: TU159606


Basic Information

Item Value
RNA id TU159606
length 277
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G127291
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 9408193 ~ 9408469 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gccatttaaagaattaaaaaccCCATGACTTCAAAGAGTTTCCTGAAGAATCATGTGCAATGCAGGGCCAccacatatatatttagaagaCAAGGAGGAAGTTTGTTGTGAGTCAGATGCCTACCGTAAGGTTGAGTGTCTGCCAGACCGGGAGATACTGTTGCCAACTGGGGATGGCAAGTTACTTCCCCTGTGCAAGTCCTCAATAGATCGACTCCAGGGCTTGGACTTATCCACAGAGTTCTCTACATTGTTCTCCAAGCTATCAAAATCAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159581 lncRNA downstream 47597 9358348 ~ 9360596 (-) True G127275
TU159507 lncRNA downstream 324607 9066840 ~ 9083586 (-) True G127229
TU159428 lncRNA downstream 643801 8764113 ~ 8764392 (-) True G127159
TU159409 lncRNA downstream 768310 8638596 ~ 8639883 (-) True G127145
TU159291 lncRNA downstream 1762471 7629915 ~ 7645722 (-) False G127039
TU159616 lncRNA upstream 47502 9455971 ~ 9468876 (-) True G127300
TU159645 lncRNA upstream 142181 9550650 ~ 9557148 (-) True G127325
TU159659 lncRNA upstream 245861 9654330 ~ 9654643 (-) True G127337
TU159669 lncRNA upstream 416327 9824796 ~ 9830690 (-) False G127346
TU159671 lncRNA upstream 416327 9824796 ~ 9830690 (-) True G127346
AMCG00000931 mRNA downstream 120717 9284104 ~ 9287476 (-) True AMCG00000931
AMCG00000925 mRNA downstream 211630 9137815 ~ 9196563 (-) True AMCG00000925
AMCG00000926 mRNA downstream 299823 9083724 ~ 9108370 (-) True AMCG00000926
AMCG00000920 mRNA downstream 331929 9072458 ~ 9076264 (-) True AMCG00000920
AMCG00000921 mRNA downstream 350670 9055744 ~ 9057523 (-) True AMCG00000921
AMCG00000932 mRNA upstream 23819 9432288 ~ 9453766 (-) True AMCG00000932
AMCG00000933 mRNA upstream 99016 9507485 ~ 9513855 (-) True AMCG00000933
AMCG00000937 mRNA upstream 407742 9816211 ~ 9822857 (-) True AMCG00000937
AMCG00000940 mRNA upstream 537102 9945571 ~ 9949996 (-) True AMCG00000940
AMCG00000942 mRNA upstream 546776 9955245 ~ 9960709 (-) True AMCG00000942
TU159288 other downstream 1762471 7629915 ~ 7645722 (-) True G127039
TU159187 other downstream 2674376 6711958 ~ 6733817 (-) False AMCG00000888
TU158856 other downstream 3835166 5572705 ~ 5573027 (-) True G126700
TU158503 other downstream 4771677 4636096 ~ 4636516 (-) True G126427
TU158313 other downstream 5751632 3652657 ~ 3656561 (-) False AMCG00000804
TU159607 other upstream 10527 9418996 ~ 9419325 (-) True G127292
TU159787 other upstream 866218 10274687 ~ 10278211 (-) True G127443
TU159975 other upstream 1289238 10697707 ~ 10700348 (-) False AMCG00000960
TU160686 other upstream 3323715 12732184 ~ 12751516 (-) True G128160
TU160833 other upstream 3948514 13356983 ~ 13359770 (-) True AMCG00001061

Expression Profile