RNA id: TU159787


Basic Information

Item Value
RNA id TU159787
length 2608
RNA type TUCP
GC content 0.47
exon number 2
gene id G127443
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 10274687 ~ 10278211 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTACAGTTTTTCAGTGGGAAGTTTATTTTCCCATCGTTGTTATGGCAGTAATGTTCTATTACAGTATGTGAAAACAGGTAATACAGCTCACAATACTGAAAACGGTTCAATAATAGCAAATAagatacatattaaaatatagccAACAGATCCccaatggtttgttttttcatctttattAGAAACAGACTGCAGCATGCACTTACTTAAAACCAAATTTAGACCAAGAAAgctcttatttttgtttaatctgaaaatgtcGTATTAGCTGTgcaaaaataactatataaaatatattgcttttacAAATGATCAAGCAAGAGTagctgtaaataaattaatctagaCAGCAACAAGAAGCAAGTACAGAAAGGGTTCAATTTAACGCTATGGGACAATTTATACAATGTACAAACATACATGAGTAATAAAACTTGGATCCTTAAACTTAATCCCAACCAAACTGCAGGAATAAAACTCCACATACACACGAACTTAAGTCAATTACACGGACATAGACCTTCACTTAAAAGaaggaaatgtatattacaaACGAGGATTCTCAATCTCCTTCTCGAAACACAGGAATGCCCTTTCTGAACCATCTACGCCTTCGTTTCCACTGAACACCACTCCGGTTCTCAGTCCATCAGCACCATGTATTTTAAGAACACAGTTCAGATCTCTTTAAAGTTGTACCcaatttattataatagtaCTAATGCatgagaatacatttgaaattttaTAAGCACCTGAAaggcatatatatttatgaataaagTGCCATCACTGTCTTGTCTGTGTATTACATGCCGTAGTAATTTCTCAGTGCAATGTCCAGCTGTGCTGAAATGTAGTAAGCGTGCAGTTCTGTAACAGAAGCATAATGGACCTATACACAGGTtagtaagaaagaaaaaaacaagtatacCAATCTAAATACTGTCTGCGGTTgttatttacaagaaaaatacaaataaaaatatttagcttacttgtaaaatatttaaatttaatatgaaaaaaaaaaaacatggacaattctgttttccattagttgttctttgtttttacaaattctAACCAAGGGTTTATGAAATCTGGttaaataatttacacattCGACTCTATAAACGATCGCTTTGGTTTCATAGAAGCAACGTGAATGGCGGGATTATCTCTTGCTATGTGCGACTGCGGTTTTGATTTATTGTCCGCGAATGAATGCGGGACGGCCACAGCTGGCTTGGGGTCCTTGAAACAGGTGGTGACTTGGCAGAACTTCTCCCCAAATTCCTTCGAGTGCATTCCATTGTGAAGGCTTCCCATGGCACCCTGAGATGGAGCTTTAATCTGGTCATGGTAAGTGCTCCCTGTTTTGGCATAAGGCAGTTCACAGTTAACAGCTTGCATCCCCCCAGTGGACATAGTGTTTGTGACTAATCCTTCTGCTGAGTGGCTGTGCCAGCTGCGGCTCGGCGGATGGCCCGGCGGATGGCCCTGCTGCAGTTGTTGAAACCTCACCGTTTTGTCCATGATCCCCATGAATGGTGTGGGTCGGGCTTTGTACTCCACTGTCCCGCTCTGACACTGCTTGCCCTTGTCCACGGTGGTCTTGATGCGCACGTCGGGCCCCTGCAGCTTCCCGTTGTCCGAGAGGCTGCTGCTGGACGCCAAGCTGCTGGTCGAACTGGAGATCTTCATGCTGTTGGCCTGGGAGCCTGGCGCCGAGATGGCGTTGGCTGCAGACTCCTTCCTCGTCTCCAGGCCATTCCCCGCTGCTCCCTGGGAGGCAGACGCCAACACGTCTAGAGATGGCACCGAATGTGCGGACAAGCGCTCGGCTGTCTTCGTGTTGCCGGAGAAGGCCTGGGAGGAGTGGTAAGAGGAAGTACTCTCTGCAGTGCAATGGAGGGCATTTTGGGCTGAACTCAACCTTTCCCCATAAGTGGTGGGTGAATCGTCAGCGCAGGACGAGCTGATATCGATGCCCGGTCCCGGCTTCAGCGCACTTGAAAGATGTCTGCTGGGCAGGGGGCTGGGAGGAGGGTACTGAGACGTGGGCTTGTTTGCATACTGGGTGTTTCCAGAGCGTCCCCCGGACTGCAGGGAGTTCATGTGCTGGTTGGTTTTGACTATCTGGGCCTGTTTGGTCGGCTGCATGAGTGACCCTTGCTGGGCCAGTGGTTCTCGTAGGTACTTGTGGGTCTGTCTGTTAGGAGGAGAGGCGGGCCTGGGGTTCTGTTGGGAGCCTCCTGCCCCTTCATGAAGCGTTCGGCTCAGCGAGTATAAACTTTGCACGTTCTGTGGCCGGAGCTGCGAGGCGGACGCTGCTTCGTCGTGCTGAGGAAGCTCTTCCTCTTCAATGTCTTTCAGCCCAGCGGTGGTCTGGATCTCCAGGCTCTGATCGGCAggcccctcctcttcctcttcctcttcctcctcgtgCTCGGAGTCGTTGCCGGGGGGCGGCTGGCTCGGCCCGGCCTGCTGTTTCTGCTGCGCGCGCTGCAGCTGCTTGCACTCGTCCTCCACGCGCACCAGCAGGCGCCGGATCTCGCGGTTGTTGGGGCAGAGCTTCGCTGCCTCGTGCAGGAACAGCAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159757 lncRNA downstream 123753 10147775 ~ 10150934 (-) True G127420
TU159669 lncRNA downstream 443997 9824796 ~ 9830690 (-) False G127346
TU159671 lncRNA downstream 443997 9824796 ~ 9830690 (-) True G127346
TU159659 lncRNA downstream 620044 9654330 ~ 9654643 (-) True G127337
TU159645 lncRNA downstream 717539 9550650 ~ 9557148 (-) True G127325
TU159830 lncRNA upstream 113093 10391304 ~ 10395926 (-) True G127478
TU159927 lncRNA upstream 286716 10564927 ~ 10566649 (-) True G127555
TU159952 lncRNA upstream 337719 10615930 ~ 10616227 (-) True G127573
TU160019 lncRNA upstream 479659 10757870 ~ 10759494 (-) True G127631
TU160081 lncRNA upstream 930330 11208541 ~ 11247944 (-) True G127678
AMCG00000943 mRNA downstream 197965 10056629 ~ 10076722 (-) True AMCG00000943
AMCG00000944 mRNA downstream 265859 9996356 ~ 10008828 (-) True AMCG00000944
AMCG00000945 mRNA downstream 286179 9987133 ~ 9988508 (-) True AMCG00000945
AMCG00000941 mRNA downstream 299922 9968147 ~ 9974765 (-) True AMCG00000941
AMCG00000942 mRNA downstream 313978 9955245 ~ 9960709 (-) True AMCG00000942
AMCG00000951 mRNA upstream 311 10278522 ~ 10294112 (-) True AMCG00000951
AMCG00000950 mRNA upstream 17370 10295581 ~ 10328082 (-) True AMCG00000950
AMCG00000953 mRNA upstream 118786 10396997 ~ 10399450 (-) True AMCG00000953
AMCG00000955 mRNA upstream 123790 10402001 ~ 10467919 (-) True AMCG00000955
AMCG00000954 mRNA upstream 191218 10469429 ~ 10476532 (-) True AMCG00000954
TU159607 other downstream 855362 9418996 ~ 9419325 (-) True G127292
TU159288 other downstream 2628965 7629915 ~ 7645722 (-) True G127039
TU159187 other downstream 3540870 6711958 ~ 6733817 (-) False AMCG00000888
TU158856 other downstream 4701660 5572705 ~ 5573027 (-) True G126700
TU158503 other downstream 5638171 4636096 ~ 4636516 (-) True G126427
TU159975 other upstream 419496 10697707 ~ 10700348 (-) False AMCG00000960
TU160686 other upstream 2453973 12732184 ~ 12751516 (-) True G128160
TU160833 other upstream 3078772 13356983 ~ 13359770 (-) True AMCG00001061
TU161258 other upstream 4314488 14592699 ~ 14598570 (-) True G128628
TU161398 other upstream 4901030 15179241 ~ 15180322 (-) True G128741

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU264271 True 1258 lncRNA 0.33 2 CI01000054 6915946 ~ 6917280 (+)
grasscarp (Ctenopharyngodon idella) TU443007 True 1130 lncRNA 0.34 2 CI01000199 257533 ~ 259332 (-)
eurasian perch (Perca fluviatilis) TU100641 True 247 lncRNA 0.51 1 NC_053118.1 23289138 ~ 23289384 (-)
striped catfish (Pangasianodon hypophthalmus) TU100641 False 1034 lncRNA 0.35 1 NC_047599.1 18893774 ~ 18894807 (+)
tiger barb (Puntius tetrazona) TU264271 True 2809 lncRNA 0.45 2 NW_025047847.1 855674 ~ 858509 (-)