RNA id: TU159869


Basic Information

Item Value
RNA id TU159869
length 1913
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G127509
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 10442993 ~ 10444937 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gatgaatgcaaataaatgtttatttagcaAGAAAACACAGGCGCTTACAGTATTATTCAATGCAAACAAAAGGGGTACttgttatgtcgtgatcacaaGCAGTCATTTAATAGGTTATTCACTCTAAGCAGAATGAATAATCAGAAGGAAGAATATTGAGAAATTatgccacacacaaaaaaaatatgattcagattttttcttgctatatataaatgtctttCTATATGCTGGAGCCCTAGATTTTTAGACACACTCAGTGATGTTTAAGATCTCAATAAAAgacatcaatacatttaaaaagctttatttaaacatttcaggtagttggaaaaaatattaaccATTTTCTTATTAATGAATATCAAACATTATTGCTAGTGtgcatatttatatacttgtaccaataattgtttttaatggaccTGTACAATTAAAGTTCAGTTATGGATCTTTGCTCACCATGTTACAGAACACacaatataaacagacaaacagcatAAAAGTCTCtctttttcaaataatgaagaTTTCCATCAAATTCcattatatgcatatttaaataaactaagggaaaatataaaacagctaACTAAAATAGTCCATGGTCAATATCTAATGATAAAtggttatattaaaaataaatcataattatagtttaaaaaaccctgtgtttaaatagaaaacaaaatacttgatTTACcatcacataacaacaatattataaactgtatttaaagCACAGGatccatttagtttttaaagtatttttcatcAAATCCCTGCGTGTTAAAGGCAACTACTGTACTTCAATAAACATGTGCCCACAtaaccacttattgattatgTACTgtgacaaaataatacatagttCCCAAAGCTGGCGGGTAAGACATATATATTGCCCCTCAAGCAGactgtaaaaatgaaaactgtgaaaGTACATTGCATCACTGTAGTCACAGACTAACAGGGTGTAAACAGATAGTCCTTATGTTCCTGTCCACACTGGCTGGCACTGTGCACCAGTGAGGTCATCTTCCAGCACACCAGCTAAACATCCTCAAACTGACTAACACTTTGTCTTGTTGAAAGACCTTACTGAAGAGAGGAAAATCACCTCAGTTAATTGTGATCTAAAGAGGTAGCATCGCTGACCCCTTTAAACATTAGACCTTGCTTTTTACCTCTGGTATATTACTTGTTtgcttaaaatattaaatactctTATGTATTACTGCTCTCGTATACCTACACTGAATGCATATGAAACGTAACACATTAGTAGTCTTTAGCTTACATGTACAGTGTTCTTTCTTTAGTCCTTAAGAGCCTCTGTGTGTGACATACATGTCGCACTTTTTCCTAAGGGCTAATGTTTTGTAAGTAATACTTCCTTTGGATATCTCTTTTTCAAGGCCAAGTTTATGTCACATGTAAACTGAATGTAGTCTATGGAGATTTTGAGTCCTTGTCCTATATTTCTCTGCTACAGGTTCCAACTTCCAGATGCACGTCTTTATGGTCTAGAGTCCAGTGTTTGAGTCAAGGTCTGTAATAAGGATATTTCCATCTAAGTCTGTAGCCTCTGAACTTGCTTGCCTGTAGTACGCATTTCCGAAAGATGAGAGCCGCCTGAACCGAACTGTATTTCTTCTGTACACAAACCAAACGGATGCTACAAGCACCACAAAAATCAGGATAGCCACCAAGACAGCGACTGGAATCAGCCCATGATGAATACCTGAAACAGACATCGTAATGTTAACACTATACATTTATGACATTTGTATTAGTTCATTTTTAACTGAAAAGTTGTACTTTCCTAACATAAAACTGTTCATTATCACTTAGAGTAATATGCTGCATTTAGAGCTACTATTGAAAACTTTCTAAACATACAGATACCAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159589 lncRNA upstream 1065404 9363107 ~ 9377589 (+) True G127278
TU159484 lncRNA upstream 1360112 9081327 ~ 9082881 (+) True G127206
TU159408 lncRNA upstream 1803170 8638596 ~ 8639823 (+) True G127144
TU159357 lncRNA upstream 2148120 8294518 ~ 8294873 (+) True G127096
TU159352 lncRNA upstream 2153187 8288789 ~ 8289806 (+) True G127091
TU160196 lncRNA downstream 1226831 11671768 ~ 11742750 (+) True G127774
TU160371 lncRNA downstream 1649204 12094141 ~ 12096863 (+) True G127924
TU160510 lncRNA downstream 1915978 12360915 ~ 12362152 (+) False AMCG00001022
TU160511 lncRNA downstream 1915978 12360915 ~ 12362152 (+) False AMCG00001022
TU160571 lncRNA downstream 2095144 12540081 ~ 12540318 (+) True G128074
AMCG00000952 mRNA upstream 51183 10381773 ~ 10391810 (+) True AMCG00000952
AMCG00000947 mRNA upstream 164782 10201657 ~ 10278211 (+) True AMCG00000947
AMCG00000949 mRNA upstream 289770 10100283 ~ 10153223 (+) True AMCG00000949
AMCG00000946 mRNA upstream 401945 10036674 ~ 10041048 (+) True AMCG00000946
AMCG00000948 mRNA upstream 407285 10024288 ~ 10035708 (+) True AMCG00000948
AMCG00000959 mRNA downstream 115619 10560556 ~ 10570905 (+) True AMCG00000959
AMCG00000957 mRNA downstream 134863 10579800 ~ 10603207 (+) True AMCG00000957
AMCG00000958 mRNA downstream 160731 10605668 ~ 10611409 (+) True AMCG00000958
AMCG00000967 mRNA downstream 204675 10649612 ~ 10680286 (+) True AMCG00000967
AMCG00000966 mRNA downstream 308149 10753086 ~ 10759497 (+) True AMCG00000966
TU159756 other upstream 288806 10147857 ~ 10154187 (+) False AMCG00000949
TU159397 other upstream 1822798 8617199 ~ 8620195 (+) True G127134
TU157662 other upstream 8746746 1668845 ~ 1696247 (+) True AMCG00000729
TU157655 other upstream 8842354 1599696 ~ 1600639 (+) False AMCG00000723
TU157377 other upstream 10101222 339640 ~ 341771 (+) False G125561
TU160309 other downstream 1554727 11999664 ~ 12011425 (+) True AMCG00001002
TU161370 other downstream 4724974 15169911 ~ 15174147 (+) True AMCG00001098
TU161504 other downstream 4964175 15409112 ~ 15420880 (+) False G128823
TU162207 other downstream 7578123 18023060 ~ 18044251 (+) True G129365
TU162326 other downstream 8100956 18545893 ~ 18547915 (+) True G129453

Expression Profile