RNA id: TU160157


Basic Information

Item Value
RNA id TU160157
length 1169
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G127743
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 11610243 ~ 11611612 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTAACAGCAAATGTATTGTATCGATTTAATTTCtcataattacttttttaattggattATTGGAGTACAACAAATCGGGAAATATGTGTTTGATAAACCATATTGATGGTATACAaagttaaaaatgtacataaatgttCTCTAAAAGTTGCATGGCACAcagtgtgaagaaaaatgacagtgcaGTCTTTTTACAATAACTTTGTAGGCAGCAACATTTACAACATATATAAGTGCAATTTAAGTCTTAAGACCTGACATTTCATTGATATTGGCAGATACCTTTTGATTCAAACAGCTGAACCTGTACAGTCTTTCTTGAGATTCGGGGAAATGTTGTGGTAACAGCAGTGGAATAGCAAACTTAGTTATACCAAGATATTTTGCCATAttctattcatattttacaattaaaagaaaaacaaatattgttttctgttactATCTACAATGAAAGCGGTATATGAAGAAATATCTCGGCTGGAAGGTATAACCATCATGGGGTATCATAAGGAAGCTTCCTACATGCCCTAAAGCAGCTGGGTATAAGAAATAGTATAACTGTCCTCTAGAATTGTTTTCTGCCCTCATACACTGTCAAgaaaatgttaagaaaaaagGAGTGGCTAAGTACTTAAATATGAACTTAAAAACTTTTGCTTCACAGATCACattgaaaggaaacattgtTTTGATGTTGAGATTGACAGTTTGCCAAGTTTATACATTTGAAGGTCGATATGTCACAGTATGTTTGTTACAAAACATTCGAAGCTAGACTTCAGTGTAAGACATGTAATATAGATCTAGTCACAGTTTGAAAACAGTTGGCAGATGTATTTAGAAACGTGGTCCATGACGCGTACAAGTATGCaagtactgtaatatatatcATGCTTGTGAGAACTTGTTAGTACATAATAGCAGTATTTCTTCCACATAAGATGAAGGAAAATGGCCGTTCTTTCCATTTAAAGATCCGTACCACCAACCACTGTTGTCTTTCTGATGAATCTCGAGTAGATCGCCTGTTGAGAGGAAAGTTGGAAAGTTTAATCTACAACAGTTATACAGCCTTCACCCTTCCCTTCAGTCTTCAGTTAAAACCCTAAGACTATAACCAGTCTCGTATCACACAGCAAACCATAGGGCCCTCTTACTTGAAACac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160156 lncRNA downstream 613 11609271 ~ 11609630 (-) True G127742
TU160154 lncRNA downstream 4067 11605804 ~ 11606176 (-) True G127740
TU160125 lncRNA downstream 202383 11396710 ~ 11407860 (-) True G127718
TU160081 lncRNA downstream 362299 11208541 ~ 11247944 (-) True G127678
TU160019 lncRNA downstream 850749 10757870 ~ 10759494 (-) True G127631
TU160162 lncRNA upstream 3845 11615457 ~ 11618105 (-) True G127747
TU160341 lncRNA upstream 297374 11908986 ~ 11911822 (-) True G127899
TU160449 lncRNA upstream 542896 12154508 ~ 12158483 (-) True G127976
TU160530 lncRNA upstream 746947 12358559 ~ 12387584 (-) False G128045
TU160531 lncRNA upstream 746947 12358559 ~ 12387584 (-) True G128045
AMCG00000979 mRNA downstream 54122 11538485 ~ 11556121 (-) True AMCG00000979
AMCG00000978 mRNA downstream 88526 11518511 ~ 11521717 (-) True AMCG00000978
AMCG00000977 mRNA downstream 300230 11302327 ~ 11310013 (-) True AMCG00000977
AMCG00000971 mRNA downstream 420042 11181932 ~ 11190201 (-) True AMCG00000971
AMCG00000969 mRNA downstream 454887 11135724 ~ 11155356 (-) True AMCG00000969
AMCG00000988 mRNA upstream 291 11611903 ~ 11614988 (-) True AMCG00000988
AMCG00000987 mRNA upstream 13479 11625091 ~ 11655006 (-) True AMCG00000987
AMCG00000992 mRNA upstream 63474 11675086 ~ 11733640 (-) True AMCG00000992
AMCG00000991 mRNA upstream 129749 11741361 ~ 11746181 (-) True AMCG00000991
AMCG00000999 mRNA upstream 183787 11795399 ~ 11802453 (-) True AMCG00000999
TU159975 other downstream 909895 10697707 ~ 10700348 (-) False AMCG00000960
TU159787 other downstream 1332032 10274687 ~ 10278211 (-) True G127443
TU159607 other downstream 2190918 9418996 ~ 9419325 (-) True G127292
TU159288 other downstream 3964521 7629915 ~ 7645722 (-) True G127039
TU159187 other downstream 4876426 6711958 ~ 6733817 (-) False AMCG00000888
TU160686 other upstream 1120572 12732184 ~ 12751516 (-) True G128160
TU160833 other upstream 1745371 13356983 ~ 13359770 (-) True AMCG00001061
TU161258 other upstream 2981087 14592699 ~ 14598570 (-) True G128628
TU161398 other upstream 3567629 15179241 ~ 15180322 (-) True G128741
TU161519 other upstream 3752455 15364067 ~ 15433469 (-) True AMCG00001118

Expression Profile