RNA id: TU160341


Basic Information

Item Value
RNA id TU160341
length 2793
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G127899
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 11908986 ~ 11911822 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctttatattttattcacatatgttacattttttttttttcaatgtctAAGTCTCACTTTCCGACAGCAATCGTAAAGTTCGATTCAGCACCTACAGTAATGTACTGTATTCGTATTGTTCATTCATACAGGagaacacacaaataaacactcaGCTTTCAGTTACAATATACACCCATCACTCAaggttttctgtgtgaatgatCATTTACAAAGTGGGGCCTGAAAACactaaggaaaaacaaaaagtaaacagaTTAGCAGCATGCATAAATTCAAGAAAAATCCAAGTCTGTTTTTCCTTTAGCCTTCCCAAATGGGATCCTTTATGTGGCCCAAAAACAAGAAATCACTTTTCTTATCATTACAAAGCATAAAACTGTCAGATTCAAGTGAGTAAATTGgctcatttttttaaaattaaagttggTTCAGGTTTTAAGAATGGTTTAAAACACATGGTACAGATTTTCCTTAAaatcagcacagacacacacgcgcgcacacacacacacgcgcacgcacacacacacgcgcacgccTTTAAGGATTACTGGTAGATGAATGACCATTTATTGTATAGGTTATGAGAAGTAgcgtaaaacaaaaatatttattttattcatctaTGACTGATTTCATTTTAAGGTTTTGGATGCTTCATTTTagacaattaaataatgtaaaaaaaaagtctgaaaatgacaatttccacaaattacacacatttgcTGCTCCACAGTCAGGGAGTCAAACCTGCTTCTACCCCATTAGGATCCTCTGCAAAGTTGCCAATGGAGGGgatacacatttgtatttgtagttttgAATTGTGAGAATGCATACACTTCAAGTTACTAAAGCAACATAAATTTAATATTCTAAgcctgaaattaaatgtaatcagaAAGCAACAGTTATCTACATTCTGATGGAAAATTATATCCGTGGTTTCTCTCCCCCACCTTAAAATGCAATGGATTAACAACCAACACAGtcttccttatttatttaaaaacatgctgtaaGACCACTTTGCAATTTCTGAATTATCTTTGTATCTTGTCTCACTGTTCACAAtgtagagaaacaaaataatcaaacctAGGATGTAAAAGTGTGCTCCGTGTTTAGGCTGGGCTCCACCAACCAGTGGGGGTACAGATGCCTGGTTCATCAAGAGCCATCcaaccccccaacacacagggagagagacacaacCCTCTCCCACCAGGACCAAGCGcgcctctttctctctcgctctctctctctctcaagtgagggaatgacacacacagagccatGCTGATCCCTGCACAAATactacacacacagcagcctccTGTGTTGACAGCCAAGACCTGAGACAGGGTTTCACTGAGGGGAGCATCTGCACATTTCCAATCAGATCACTATGCACACCACATCTGGTTGGTAACGAGAGGCAGGCATGCATGGCAGTAATTAGGACCTGCCATGTTCTGTCTTACTAATTCGGGGAAGTACATTGAAATCTATATGCTATTATCACCAGTAATGAACCAAATTGTTTTGGTAAATCATTTCTTAGACCAAGAAAATTACTGTACAAAGGTAaaatttgatgttttacattaatagcagcatttcttaaaatattttacaattattttctctttcagactagcaaataaaaaagaaaaggcatttcCTGAGGATGAATTGCAACTAGACCTTAAAATGGAGCCTGCACACTAGAGAAATCCCCCACATTTAGTGTAAATCCACCTGTGATATCTAACATTACATGTCTACAAACCATCTCTTCAATACACTCCACAGTTACGGATCTAGAACTCCTACATGAGCTTACAAACCCATACCAGCAAAAATAACATCAGCACAAGATAGTAACTCAGAAGAGAAAAGGGATATGTGTTGACTCAGACACATGACACGAATTAAATATAGCATTCCTTCTAGCATCTTTATCAGAGAGAGTATTCGGCCCCAGAATTGCAAGAAAAGCCtccaatttgtttaaaaaaaaaaaaaagattataaatgtattatctgGTATAGCTGGGCAAATAGAGCGTCCACAAGGAGactaaaaaaaatctgctggTCTGAACTTGTGATTGGTTTCGGATTCCCAATCGGGTGTTTACAAACGTTTACAAATCCTCAGCTGCTCAAGGTGTAAATGTCAGCCACATCccaggctgtgtgttttgtgtggctCAGCTCTTCCGAATCAGGTATCCCTTTTCAAATTTAACGGCCTGTGAGTAAAGTTGTGCTTTAACATTCAACTTCTAACTTCACCTCTCTCTTTAGACATGATTGTACACAAAATGTCGTCACACATACCATAGCTATGTCAGCAGTACCTCCCTGCCATAGGTTTAGAAGGATTTTCAGAGGCTAAAACAAGAGCCCTAATATTTTCACAACACGCCGGCGTTTTGCCCGGGTGGATATGTTATAATCCATTGTAATGGGGGCCCCAGCGCTTGTTGATGTGGTCGAAGGTGTGAGACACCCACTGCTGCTCCAACACCCGGTACCTTTCTTCACACAGGTAGAGCGGCTTGCCACGGCTACAGGGAGGGAAAGAAGGGAACCAACATTTATaatcataaatacacaaaagatAAGAAATagccacaagaaaataaatatgtattaggTCATTAGCAGTTCTGTGACTACAGTGTTACTATATATTCTTTGTGGTGTTACTATACCATTCCTCCACACTTTATCTGGGTGGTCTTAAGCCCCTGCTGTTTTATGGTTCAGAGGACATTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160162 lncRNA downstream 290881 11615457 ~ 11618105 (-) True G127747
TU160157 lncRNA downstream 297374 11610243 ~ 11611612 (-) True G127743
TU160156 lncRNA downstream 299356 11609271 ~ 11609630 (-) True G127742
TU160154 lncRNA downstream 302810 11605804 ~ 11606176 (-) True G127740
TU160125 lncRNA downstream 501126 11396710 ~ 11407860 (-) True G127718
TU160449 lncRNA upstream 242686 12154508 ~ 12158483 (-) True G127976
TU160530 lncRNA upstream 446737 12358559 ~ 12387584 (-) False G128045
TU160531 lncRNA upstream 446737 12358559 ~ 12387584 (-) True G128045
TU160562 lncRNA upstream 581356 12493178 ~ 12495215 (-) True G128070
TU160632 lncRNA upstream 785355 12697177 ~ 12697668 (-) False AMCG00001041
AMCG00001000 mRNA downstream 61826 11844137 ~ 11847160 (-) True AMCG00001000
AMCG00000998 mRNA downstream 93936 11811434 ~ 11815050 (-) True AMCG00000998
AMCG00000999 mRNA downstream 106533 11795399 ~ 11802453 (-) True AMCG00000999
AMCG00000991 mRNA downstream 162805 11741361 ~ 11746181 (-) True AMCG00000991
AMCG00000992 mRNA downstream 175346 11675086 ~ 11733640 (-) True AMCG00000992
AMCG00001015 mRNA upstream 182644 12094466 ~ 12110600 (-) True AMCG00001015
AMCG00001014 mRNA upstream 216743 12128565 ~ 12141472 (-) True AMCG00001014
AMCG00001021 mRNA upstream 281377 12193199 ~ 12210908 (-) True AMCG00001021
AMCG00001020 mRNA upstream 374345 12286167 ~ 12287617 (-) True AMCG00001020
AMCG00001024 mRNA upstream 488688 12400510 ~ 12415391 (-) True AMCG00001024
TU159975 other downstream 1208638 10697707 ~ 10700348 (-) False AMCG00000960
TU159787 other downstream 1630775 10274687 ~ 10278211 (-) True G127443
TU159607 other downstream 2489661 9418996 ~ 9419325 (-) True G127292
TU159288 other downstream 4263264 7629915 ~ 7645722 (-) True G127039
TU159187 other downstream 5175169 6711958 ~ 6733817 (-) False AMCG00000888
TU160686 other upstream 820362 12732184 ~ 12751516 (-) True G128160
TU160833 other upstream 1445161 13356983 ~ 13359770 (-) True AMCG00001061
TU161258 other upstream 2680877 14592699 ~ 14598570 (-) True G128628
TU161398 other upstream 3267419 15179241 ~ 15180322 (-) True G128741
TU161519 other upstream 3452245 15364067 ~ 15433469 (-) True AMCG00001118

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000348_00306451_00364181.mRNA True 5770 mRNA 0.44 21 CI01000348 305426 ~ 366016 (-)
eurasian perch (Perca fluviatilis) TU167573 True 2632 lncRNA 0.38 2 NC_053123.1 17124881 ~ 17127544 (-)