RNA id: TU160530


Basic Information

Item Value
RNA id TU160530
length 2289
lncRNA type inter_gene
GC content 0.31
exon number 2
gene id G128045
representative False

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 12358559 ~ 12387584 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tacaaaagtttatttttagatttttattttattttaaatgttaacagtaaaaaaaaaatccacaggtAAACGATTTTAGGAATCAGGTTTTGGGTGCAGGATTTATTAAAAGGAGGAGCCAGTGTTGAGACTTGAAAccacattaattatataaatccTGTCCTAATAAATAGAAGGGGTTTGAAGGGAAAACACTAGCATTATGAAGTTACTGTCTGTATGAAGAACTTTCTGGGtcatacattacaatatttacaacattcctttgttttcttgaaaactgCAATAATGGCTCCACTAAATATTGACAGTTCAAATCTAAATCAATTTCCTGTtcagaatattttaatataactttcTTTCTTCGACTTTATAGGAATGCTTGTGTGGGGCTTAAGggctacaaaatcaaaaacaatatcaaaaggaaaatgcatCAATGTTGTATCAACATTATATTCAATTACTACTACATTTAAAGTTCCCCTAAAATTGAAGTACATTAGTAGTTAATGCAGCAGAATAAAccaagaacaaaaccaaatacTGTAAACATTGTGTTCTGAGTAAATCGGTATCATGTTCTTTCCAAACTTGCAAACATATTGCTTTTGGACTGGCTGGGGTCTCAGTTACTACTTCCCTTTTAAGGGAAAGGGAATGGACTgccaaatacatgcatacatacattcaacTTACAGAGTGCATTGGGAAATAATTTGAATTCACactactttttttaatgtgtttttttatattaaaaacaatattaatcttTGGCCTATAATTACTTGCAAGAACAGTCTGATACACTAAATACCAGATTGtaccacatttttttaaatatatacaaaacatacaaaatgtttcagCCTATCCATACAAAACAGATGAACACATGAATGATTAATCAAAAAGCTTAATTTAAGAAGCTGTAAAAGTTTTAGTTTGGTGCTATAGCTGATATGTCCATATCTACAAAAATATGGATGTGCCAACCAATGACATTCACAGCTATTGCTGAGCTGTAACACTAAACTTCATACCATATGGTCATTTCAAAATTATGACAAAAGGTTTATACCCAAATCCCCTAAACAGAAATATTTGTGGTGGCTAaagaacagttttaaaaatataacttaagCAGTGAAAGTAGATGTGATTTCCATANNNCACTGTTAACAGCTGTACATCTTGTTGAAATATGGAAATCACATCTACTTTCACAGCCTGTTTTATTTACACCACTGTTGtacaaatatttctgttttaggGAATCACTTGAGTTTGAACCTATTGTCATAATTTAGAAATTACCATATGGTATGAAGTTTAGTGTTAATGCTGAGCAATAGCTGTGAATGTCATTGGTTGTCCTGGCACATCCATCTTTTTGTGGATATGGACATATCAGCTATAGCACCAAACTAAAACTTTTACAACTTTAATTAAGCTTTTTAGCCTCACTACTTATTAAGTGCTTCACCAGTCATGTGTTCATCTGGTTTTTATGTATAGGCTGAAACATTTTGTAcgttttgtatatatttaaatatttttagtacaatatggtatttattttatcatagaCTGTTCTTGCAATTAAATATAGGCCAAAGATACATATTgtcttttaaagaaaagaaaaatgcatttaaaaaagtagtGTGCATTTGAATTTCCTTTTTATGCACTCTGTAAGATGGCAGTCCATTGCTTTTTGCTTAAATGTGACTGAGAACCCAGCCAGTCCAAAAGCAATATTCCCTTAGGATCAGTTTCTGAATTTGTAGTTGACATGTTTGGAAAGAACATGGCACCCATTGACTTAGTACACAATGTTTACAGCATTTGGTTTTGGGTTTCTTGGTTTCTTCTGCAAAATAACTCCTAACTCCCTTAGATTTCAGGGGAACTTTAAATGCAGtagtaattcaattaaatgttggTGTATTGTACAACAATgatgcattttactttttatattgttttttgattttgtatctGAATCTTAAAGCCCCACACAAACATTCCTATAAAGTTGAAGAAAAAGGTTTATTGAAATACTCTAAACAGGAAATGGATTTAGATGTGAACTGTCAATTTTTAGCGGAGCCATTATTGCAGTTTTCAAGATAACGAAGGAAActtgtaaatattgtaatgtatgaCCCAGAATGTTGCAAATGctctaaacaaatatttttattttttcaagtctCATCACTGGCTACTTCCTTTAATAAATCCTGCACCCCAAACCTGATTCCTAAAATCAAGTTTACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160449 lncRNA downstream 200076 12154508 ~ 12158483 (-) True G127976
TU160341 lncRNA downstream 446737 11908986 ~ 11911822 (-) True G127899
TU160162 lncRNA downstream 740454 11615457 ~ 11618105 (-) True G127747
TU160157 lncRNA downstream 746947 11610243 ~ 11611612 (-) True G127743
TU160156 lncRNA downstream 748929 11609271 ~ 11609630 (-) True G127742
TU160562 lncRNA upstream 105594 12493178 ~ 12495215 (-) True G128070
TU160632 lncRNA upstream 309593 12697177 ~ 12697668 (-) False AMCG00001041
TU160682 lncRNA upstream 338110 12725694 ~ 12731187 (-) False AMCG00001039
TU160683 lncRNA upstream 338110 12725694 ~ 12731187 (-) False AMCG00001039
TU160685 lncRNA upstream 338110 12725694 ~ 12731187 (-) True AMCG00001039
AMCG00001020 mRNA downstream 70942 12286167 ~ 12287617 (-) True AMCG00001020
AMCG00001021 mRNA downstream 147651 12193199 ~ 12210908 (-) True AMCG00001021
AMCG00001014 mRNA downstream 217087 12128565 ~ 12141472 (-) True AMCG00001014
AMCG00001015 mRNA downstream 247959 12094466 ~ 12110600 (-) True AMCG00001015
AMCG00001000 mRNA downstream 511399 11844137 ~ 11847160 (-) True AMCG00001000
AMCG00001024 mRNA upstream 12926 12400510 ~ 12415391 (-) True AMCG00001024
AMCG00001035 mRNA upstream 148234 12535818 ~ 12544417 (-) True AMCG00001035
AMCG00001033 mRNA upstream 156859 12544443 ~ 12601997 (-) True AMCG00001033
AMCG00001031 mRNA upstream 218778 12606362 ~ 12617955 (-) True AMCG00001031
AMCG00001034 mRNA upstream 249160 12636744 ~ 12641982 (-) True AMCG00001034
TU159975 other downstream 1658211 10697707 ~ 10700348 (-) False AMCG00000960
TU159787 other downstream 2080348 10274687 ~ 10278211 (-) True G127443
TU159607 other downstream 2939234 9418996 ~ 9419325 (-) True G127292
TU159288 other downstream 4712837 7629915 ~ 7645722 (-) True G127039
TU159187 other downstream 5624742 6711958 ~ 6733817 (-) False AMCG00000888
TU160686 other upstream 344600 12732184 ~ 12751516 (-) True G128160
TU160833 other upstream 969399 13356983 ~ 13359770 (-) True AMCG00001061
TU161258 other upstream 2205115 14592699 ~ 14598570 (-) True G128628
TU161398 other upstream 2791657 15179241 ~ 15180322 (-) True G128741
TU161519 other upstream 2976483 15364067 ~ 15433469 (-) True AMCG00001118

Expression Profile