RNA id: TU160562


Basic Information

Item Value
RNA id TU160562
length 1915
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G128070
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 12493178 ~ 12495215 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTTgagcaaatacatttattaggtatatattatttacaggatacacatacagtacaaagCTTTAACACAATAGATACCTCACAGCTTCTCTACAGAGGGGGTGCAGTCTGTTTTTGTGCTCctttaaaacaatcaatttgCATGCTGATGTCAAACTGAATACTTCTGGCACCATATCTATAATTTAATgatcacagaaaaacagaaagatcTATAAATGTCTATTTACAAAGCAAAGCAAGCTTAGTGCtgaactttttttaatgttgttatccatttaaaaaaataaaaagctttcttCTGTCATAAGTGAATGGATAGCacataaactacattttaatgcCCGTAAAATCATGTACAACAAAATATGACATAAATATatggtaaaaacaaaatttgaataaaatatcctgTTAATTCAAGGCCTGCGTTCTTATTCCAGTTAAAGGGGAAACggctaaatgtgtttttatacattacTGTTTATGAGCATTCTTAGAGGCTACACATTTTTGGGAATTCCTGGAGCTTCACCATCATTTACTTTCTATACAGGACACACATCATGGAATCTTCTAATGGAAACTTGGCAGGTTCAGATAGTTTGCTAGTTTGCCTTATCATAAGAGTATGCAAGGGAAACATGGTTGATAGGTCACATCATATAGGTGGATTTCCAAACCAAAGCAAATTGCTATAATTTCCTGACCTGAATACATACTAAAGACGGAGCACATTTACAGCAAACGCACTTTGACAGGAACTCGGTATTGAAGCAGCAGTTTAAGGGATTTCAAGTAggagttttcttttaaaaaggaaacaacgTCCTCCTCCCAAAAAAACCCAAACTGACATTAGATGATGCAAACCCTAAAGGTAGGGACTGGACATGAGGTCTTCAGACttagagctttttttttttttttgtctttctaagAGAGCCGCAATGAGGGTCTCCGTGGTACGTAAGATAAATACCAAGCATGGTTATGTTTTGGCAGAAAAGTAGCAGCATGAACACTGTCATCAACCAACTGCTGTGCCACCAAGTCCACAGACTGGTTTTGTTTAGGCCCTCCGAGGCTCCAGTCTGTGGGAGAGCTGGGATAAAGTCCTCTGGTTGTCAATCACATTCAGCTGTCGCACGTAGCTCCGTACTTCCTGGTGATTCTTAATAGCAACTGATGCATCTGGATCTGAGAAAGGGATGAGAAACACAATCCcatgaaagtaaaatgtatcaaaaagaACCAGACATTGGTTTCTAAATCAGTCATTCACAATCCCTGAAGTTGGAGTCTGGGTATCATTACTGCAGAAATCAGCATGTCGATGAGCTGTGGATAAGGATCCACTTAACTCGCCACATTCTGCAGCTTAACAGACGACGCCACCTACTGAGGAATCATGTAATCTTCGCAATAATCAGATCGCTGAAGTGATCTTAAGTACAGGGTGAATTACAACCACAGTTCTTGAAATAGAATTTACTAATGTATCGATCGAATCACAACGAGCTCAAATCATGCAATCAAAATCCCTTGAGGAGACCATTTTGGCGATAAATAATTCAGTTAGAATAGTCCCCGCCTGCTATGATGTCATTATGCCTaaataagcaatacatttaaaaagtgcaaaacagaATTGAAAGGCTTATCTGAGGTCAGGTGGTTTTGACAGTGACTCACTGAATGGTTGACTTCGGCAGTATCTGACTATCCTCACGGTGTTGGCAATCATACGCTTTTTTCAAAATTGACCAGACTGTCTATAAAGGTCTTGTTGCCCTCATGGGTAAAAGTCATatctaaaaacaacaaaaacaatcttttAGGCACTAAACCACAGGCTGTGCATGTTTATACATCATCTGTTTCATATTGGTTTCTGTCTGAATGTCAATCTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160530 lncRNA downstream 105594 12358559 ~ 12387584 (-) False G128045
TU160531 lncRNA downstream 105594 12358559 ~ 12387584 (-) True G128045
TU160449 lncRNA downstream 334695 12154508 ~ 12158483 (-) True G127976
TU160341 lncRNA downstream 581356 11908986 ~ 11911822 (-) True G127899
TU160162 lncRNA downstream 875073 11615457 ~ 11618105 (-) True G127747
TU160632 lncRNA upstream 201962 12697177 ~ 12697668 (-) False AMCG00001041
TU160682 lncRNA upstream 230479 12725694 ~ 12731187 (-) False AMCG00001039
TU160683 lncRNA upstream 230479 12725694 ~ 12731187 (-) False AMCG00001039
TU160685 lncRNA upstream 230479 12725694 ~ 12731187 (-) True AMCG00001039
TU160675 lncRNA upstream 269697 12764912 ~ 12810017 (-) True G128155
AMCG00001024 mRNA downstream 77787 12400510 ~ 12415391 (-) True AMCG00001024
AMCG00001020 mRNA downstream 205561 12286167 ~ 12287617 (-) True AMCG00001020
AMCG00001021 mRNA downstream 282270 12193199 ~ 12210908 (-) True AMCG00001021
AMCG00001014 mRNA downstream 351706 12128565 ~ 12141472 (-) True AMCG00001014
AMCG00001015 mRNA downstream 382578 12094466 ~ 12110600 (-) True AMCG00001015
AMCG00001035 mRNA upstream 40603 12535818 ~ 12544417 (-) True AMCG00001035
AMCG00001033 mRNA upstream 49228 12544443 ~ 12601997 (-) True AMCG00001033
AMCG00001031 mRNA upstream 111147 12606362 ~ 12617955 (-) True AMCG00001031
AMCG00001034 mRNA upstream 141529 12636744 ~ 12641982 (-) True AMCG00001034
AMCG00001032 mRNA upstream 157396 12652611 ~ 12658389 (-) True AMCG00001032
TU159975 other downstream 1792830 10697707 ~ 10700348 (-) False AMCG00000960
TU159787 other downstream 2214967 10274687 ~ 10278211 (-) True G127443
TU159607 other downstream 3073853 9418996 ~ 9419325 (-) True G127292
TU159288 other downstream 4847456 7629915 ~ 7645722 (-) True G127039
TU159187 other downstream 5759361 6711958 ~ 6733817 (-) False AMCG00000888
TU160686 other upstream 236969 12732184 ~ 12751516 (-) True G128160
TU160833 other upstream 861768 13356983 ~ 13359770 (-) True AMCG00001061
TU161258 other upstream 2097484 14592699 ~ 14598570 (-) True G128628
TU161398 other upstream 2684026 15179241 ~ 15180322 (-) True G128741
TU161519 other upstream 2868852 15364067 ~ 15433469 (-) True AMCG00001118

Expression Profile