RNA id: TU160686


Basic Information

Item Value
RNA id TU160686
length 1127
RNA type TUCP
GC content 0.65
exon number 5
gene id G128160
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 12732184 ~ 12751516 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGAAGGTCCCGGATCTGGGAGAAGCACAAGTTTCTCCGCAGACACACAAGCTATAAATAGCTTCACTCGGAGGAAAATGCCCCGTTTGCAAAAGCAGTAAAGACTCCATCACCTAACGGGAtgtaagaaaactgaaaacaaaagaaacccaaACAGGAGTGAGAAGTTGAGAAGGAATATCAAGGACAGAAGATGCCAGTTCCtccgcccccgcccccgcccgCTGCGCCCCCTCCACCCACCTTTGCATTGGCCAATACAGAAAAACCTCCTCTGACCAAGTCTGGACAACAGAGTAGGAGTGCTCTGTTGTCGGATATTTCAAAAGGAGCAAGATTAAAGAAGACTGTGACAAATGACAGAAGTGCTCCAGTATTTGAAAagcCCAAGGGCTcaggggggggaggaggaggtggcgGCGGCGGTGGCGGTGGCGGTGGTGGCGGCGGTGGGGGAGGAGCTCCAGGTGGACTCGGAGGTCTCTTCCAAGGTGGGATGCCGAAGCTGCGGTCTGCGGGGAACCGGGAGAGCGGTGACTCTGGTGGGGGGAGACCCCCAATGCTGCCTCCGGGAGGACGAGCAACCTCAGCCAGGCCCTTTGGGGGGAGCTCTGCCTCCGCGTCCCGGTTTCCAGGTGCACCCCCTTCTGTACCGAGGAGCGGTGCCCCTGAGCTACCCCGAGGCCGCGTGACTCCGCCCCGGCCAGAGATGGGGGGTGGGCCGCCTCCTGTGCCCAGCACCCCCCGGCCTCCCCAAGGGGGCTTCCAGAACAGAGGCCCACCACCCCTGCCAGGAGGAGGCCGCCCCCCCAGCTCCAGCCCgggccccccacccccagccctgCCAGGAGGAGGCCGCCCCCCCAGCTCCAGCCCGGGCCCCCCAGCCCTGCCAGGAGGAGGCCGCAACCTCGGCTCCAGCCCGGGCCCACCACCCCCATCTCTACCAGGAGGAGGCCGCCCCTCCAGCTCCAGCCTGggccccccaccaccctcctTGCCAGGCAGGAATCAGGGCCCGCCGCCTGTGCCTGGGGGCAACGCCTTCCCTCGGCAGCCCTCTTTCTCGAACACCCCCGTGCCCAGCTCTGGCcgccctcctctccctcccgcCCCTGGCAGGTCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160682 lncRNA downstream 997 12725694 ~ 12731187 (-) False AMCG00001039
TU160683 lncRNA downstream 997 12725694 ~ 12731187 (-) False AMCG00001039
TU160685 lncRNA downstream 997 12725694 ~ 12731187 (-) True AMCG00001039
TU160632 lncRNA downstream 34516 12697177 ~ 12697668 (-) False AMCG00001041
TU160562 lncRNA downstream 236969 12493178 ~ 12495215 (-) True G128070
TU160675 lncRNA upstream 13396 12764912 ~ 12810017 (-) True G128155
TU160735 lncRNA upstream 248066 12999582 ~ 12999876 (-) True G128191
TU160764 lncRNA upstream 313624 13065140 ~ 13070429 (-) True G128212
TU160793 lncRNA upstream 455358 13206874 ~ 13211855 (-) True G128237
TU160800 lncRNA upstream 496373 13247889 ~ 13280730 (-) True G128242
AMCG00001040 mRNA downstream 10505 12705465 ~ 12721679 (-) True AMCG00001040
AMCG00001041 mRNA downstream 28274 12697562 ~ 12703910 (-) True AMCG00001041
AMCG00001030 mRNA downstream 52756 12676022 ~ 12679428 (-) True AMCG00001030
AMCG00001032 mRNA downstream 73795 12652611 ~ 12658389 (-) True AMCG00001032
AMCG00001034 mRNA downstream 90202 12636744 ~ 12641982 (-) True AMCG00001034
AMCG00001038 mRNA upstream 897 12752413 ~ 12760367 (-) True AMCG00001038
AMCG00001044 mRNA upstream 14143 12765659 ~ 12777013 (-) True AMCG00001044
AMCG00001043 mRNA upstream 37819 12789335 ~ 12795048 (-) True AMCG00001043
AMCG00001046 mRNA upstream 62925 12814441 ~ 12836485 (-) True AMCG00001046
AMCG00001045 mRNA upstream 85926 12837442 ~ 12841125 (-) True AMCG00001045
TU159975 other downstream 2031836 10697707 ~ 10700348 (-) False AMCG00000960
TU159787 other downstream 2453973 10274687 ~ 10278211 (-) True G127443
TU159607 other downstream 3312859 9418996 ~ 9419325 (-) True G127292
TU159288 other downstream 5086462 7629915 ~ 7645722 (-) True G127039
TU159187 other downstream 5998367 6711958 ~ 6733817 (-) False AMCG00000888
TU160833 other upstream 605467 13356983 ~ 13359770 (-) True AMCG00001061
TU161258 other upstream 1841183 14592699 ~ 14598570 (-) True G128628
TU161398 other upstream 2427725 15179241 ~ 15180322 (-) True G128741
TU161519 other upstream 2612551 15364067 ~ 15433469 (-) True AMCG00001118
TU161636 other upstream 2808829 15560345 ~ 15909126 (-) False AMCG00001127

Expression Profile