RNA id: TU161007



Basic Information


Item Value
RNA id TU161007
length 645
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G128402
representative True

Chromosome Information


Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 14084286 ~ 14084930 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CCAGCTTTCATTCCCATGTGAGTGTAATAACACGGAATATCCAAATAAAGATCCGTTTGGTCCTTGGAAAGGTATAAACTTCTCCACATCCAAATTGTAACAGTCCACATGGCTAACCAAATACCAAACGCACGCTACACGCAGTGCATTGGACCAGCTATAAACTTTTTCCAACTTGTTCCGATccatatttgaaaacatgttttaaaagtggCATGCACCTAAAGCACTGACGGCTTAAAAAGCGTTGTactgaaaagcagaaaaaaagaagggAACGAGCTGATACATCCGTTTTTACATGACAAACAGTTACACTAGCTGTAAAAAAAGTTACAGTGCCTCTCTCCTGTTGCTTTCATCTGCTCTGATCTGCAACACTTCCAACTGTTTCAGTCCTGTCATGTGAAAAAGCGATTCCGTTAGGGGGAGCCTTTACATCCCTGCATACAGATGTGTCTTGCAAAAAGTAAAGGCAAGGCAAGTTCGCTCTCATTAGCATATATGAAGTTATACATTATGGAAACCAAGATGAAAAGTTGCAAATCACGTTTGGTATTAACCCTGGGCTGGTGTGAAAGTGAATGTAGAGGACTAGCTGGCACAGTTGTTCAAAAGCTCCTCTGGATGGGAGGCATGTGTCAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU160870 lncRNA upstream 620804 13461666 ~ 13463482 (+) True G128294
TU160823 lncRNA upstream 701642 13357491 ~ 13382644 (+) False G128255
TU160825 lncRNA upstream 724548 13357491 ~ 13359738 (+) True G128255
TU160703 lncRNA upstream 1243278 12837651 ~ 12841008 (+) False G128171
TU160704 lncRNA upstream 1243278 12837651 ~ 12841008 (+) True G128171
TU161297 lncRNA downstream 688688 14773618 ~ 14776723 (+) True G128662
TU161300 lncRNA downstream 691929 14776859 ~ 14779441 (+) True G128663
TU161347 lncRNA downstream 986143 15071073 ~ 15073902 (+) True G128697
TU161406 lncRNA downstream 1125423 15210353 ~ 15211325 (+) True G128747
TU161435 lncRNA downstream 1241064 15325994 ~ 15326220 (+) True G128772
AMCG00001078 mRNA upstream 28508 14016104 ~ 14055778 (+) True AMCG00001078
AMCG00001079 mRNA upstream 76954 14006307 ~ 14007332 (+) True AMCG00001079
AMCG00001074 mRNA upstream 148446 13925452 ~ 13935840 (+) True AMCG00001074
AMCG00001075 mRNA upstream 235424 13846399 ~ 13848862 (+) True AMCG00001075
AMCG00001070 mRNA upstream 298429 13774575 ~ 13785857 (+) True AMCG00001070
AMCG00001082 mRNA downstream 140800 14225730 ~ 14264053 (+) True AMCG00001082
AMCG00001085 mRNA downstream 243370 14328300 ~ 14333025 (+) True AMCG00001085
AMCG00001083 mRNA downstream 258818 14343748 ~ 14351478 (+) True AMCG00001083
AMCG00001084 mRNA downstream 287497 14372427 ~ 14399759 (+) True AMCG00001084
AMCG00001089 mRNA downstream 319392 14404322 ~ 14473499 (+) True AMCG00001089
TU160309 other upstream 2072861 11999664 ~ 12011425 (+) True AMCG00001002
TU159756 other upstream 3930099 10147857 ~ 10154187 (+) False AMCG00000949
TU159397 other upstream 5464091 8617199 ~ 8620195 (+) True G127134
TU157662 other upstream 12388039 1668845 ~ 1696247 (+) True AMCG00000729
TU157655 other upstream 12483647 1599696 ~ 1600639 (+) False AMCG00000723
TU161370 other downstream 1084981 15169911 ~ 15174147 (+) True AMCG00001098
TU161504 other downstream 1324182 15409112 ~ 15420880 (+) False G128823
TU162207 other downstream 3938130 18023060 ~ 18044251 (+) True G129365
TU162326 other downstream 4460963 18545893 ~ 18547915 (+) True G129453
TU162312 other downstream 4470221 18555151 ~ 18558174 (+) False G129442

Expression Profile