RNA id: TU161256


Basic Information

Item Value
RNA id TU161256
length 878
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G128627
representative False

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 14590502 ~ 14592589 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTTGTATTTCAACACGAAGACTAGTGTCAACTGTTCCCAGGATGTTACTGATTTGAACTTTGTACTTTCCAGCATTGGTCTTGCGTTGCACATTCCTGACTACCAGGTGAGTGTAGTGCTCAGTATTTTCAATAGTAACATTCTCAGATGGCTGTAGTGGTTTCTTGCCATAGAACCATAAGATCTGTGGCACTGGACGTCCAATGTATACAACATGCAGACGAAGACTTGTTCCACATCCTGCATAGTATATGTCTTTCAGTGGGAATCCAGGGTGGAACTGAGGAGCAGCTTGCAGGAATAGTTTCCCACTGGTCTCAATTTCCCCAGCATCATTGATTGCTCTGCAAGTATATAATCCTTCATCTTCCTGTTCATCTGTTACCACAGATAGTGAATGGTTTCGGCCGTCAGagctcattttgtatttgcgACTTTGTATTAGTTCCTTGCCATATCTGTACCACTTAATTTCAGGAAGAGGTCTGCCAATAATCTGGCATTTCAGCTGACCTGCTTCACCAAGTTTAGTGGTGACATCTTCCATTTCTTTCCTGATACTTGGTGCTTCTCCAGCACtcaatttggttttaattgcCATAGCTGTTCTGCGTGGCCTGCTGATTCCTGTTTCATTCTCAGCAAGGATTCTGAATTCATACTCAGTTGCCTCCTGGAGACCACCCATGGTAAACTGTCTATCCTTTTGGCGTTCTTTGTTGCATTTCTTCCATGCACTGTCTCCAGATTGGCGGTATTCAATCCAGTATCCCAAGATCTCCTTCCCTCCATCACATTCAGGGCGCACCCAATGTATGGTGATGCTGTCCTTGGTAATGGAAATGATATCAATTTCGCCTGGCTGGCTTGGTTTGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161238 lncRNA downstream 5448 14584289 ~ 14585054 (-) True G128614
TU160999 lncRNA downstream 581831 14006269 ~ 14008671 (-) True G128395
TU160951 lncRNA downstream 804589 13784033 ~ 13785913 (-) True G128358
TU160947 lncRNA downstream 810846 13779232 ~ 13779656 (-) True G128355
TU160917 lncRNA downstream 816624 13772821 ~ 13773878 (-) False AMCG00001068
TU161262 lncRNA upstream 28102 14619572 ~ 14623133 (-) False G128631
TU161264 lncRNA upstream 28102 14619572 ~ 14620925 (-) True G128631
TU161320 lncRNA upstream 182092 14773562 ~ 14775639 (-) True G128676
TU161317 lncRNA upstream 182164 14773634 ~ 14775639 (-) False G128676
TU161327 lncRNA upstream 365371 14956841 ~ 14957052 (-) True G128681
AMCG00001081 mRNA downstream 437644 14149024 ~ 14152858 (-) True AMCG00001081
AMCG00001080 mRNA downstream 505716 14054414 ~ 14084786 (-) True AMCG00001080
AMCG00001076 mRNA downstream 608570 13963203 ~ 13981932 (-) True AMCG00001076
AMCG00001077 mRNA downstream 630459 13939711 ~ 13960043 (-) True AMCG00001077
AMCG00001073 mRNA downstream 746101 13820019 ~ 13844401 (-) True AMCG00001073
AMCG00001092 mRNA upstream 20216 14611686 ~ 14619008 (-) True AMCG00001092
AMCG00001093 mRNA upstream 32955 14624425 ~ 14627710 (-) True AMCG00001093
AMCG00001091 mRNA upstream 141222 14732692 ~ 14761267 (-) True AMCG00001091
AMCG00001096 mRNA upstream 189736 14781206 ~ 14991380 (-) True AMCG00001096
AMCG00001097 mRNA upstream 403780 14995250 ~ 14998306 (-) True AMCG00001097
TU160833 other downstream 1230732 13356983 ~ 13359770 (-) True AMCG00001061
TU160686 other downstream 1838986 12732184 ~ 12751516 (-) True G128160
TU159975 other downstream 3890154 10697707 ~ 10700348 (-) False AMCG00000960
TU159787 other downstream 4312291 10274687 ~ 10278211 (-) True G127443
TU159607 other downstream 5171177 9418996 ~ 9419325 (-) True G127292
TU161258 other upstream 1229 14592699 ~ 14598570 (-) True G128628
TU161398 other upstream 587771 15179241 ~ 15180322 (-) True G128741
TU161519 other upstream 772597 15364067 ~ 15433469 (-) True AMCG00001118
TU161636 other upstream 968875 15560345 ~ 15909126 (-) False AMCG00001127
TU161965 other upstream 2581400 17172870 ~ 17173677 (-) False AMCG00001156

Expression Profile