RNA id: TU161297


Basic Information

Item Value
RNA id TU161297
length 3106
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G128662
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 14773618 ~ 14776723 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACTTCTTTAGACTTTACTttttcagaaattatttattataggcAAATTGTAATCCATATACTTCAGATTATTACAAAGGAGTACATGTACAGAattgttttacacttttaagCTTACATATAGcgacatatttgaaataatgtccTTCCACAAAATCTCTTTAAACTCTGCATATCCACtgacatataaaaataattggtAAAGATTAATGTTTCTAAGACATTTATGTAGTTTCTTTTTTCAGCACAGTGATGCATTAATTCATAATccattttttcagtttgaatggttttgcaaagtacaataaaaatacagattttcatcttaaaaaatcattttgaaGGGCTAGTAAAACAGCCATAGTATACAAAAGATAAAGTAAATCAACTGAATAACAAACTCTTTAAAGAAATTCTACAGTTCTACATAATGTTTATTgtgttaatattgtatgaaagtgttttatatataacgGAAGACTTTCTGTCTTTCATAAGGTTAAAAACTGAAGTCAATGCTTCACAAGCAAACAAGTACAGTTTACAGGTGTGCGGACACTAACATTCAAAATTCTCTGCGCGTATCATTAAATCAAAAAAGAATTACAGCAAGGTGTTCCATTTCAGCTGTCTTTGGGAAAATACCACATTGaactaattgtataaaaactCACCAGAAAGtagtgctgtgtttttgttttagtttttaggaTTCCTATCACATAATGTTGTTAattttcatcttcatgttcTCAAATTTGCACCAATTCCATTTttgcatataataatatacactgcATTGTGTAAATGATACAGTCCTTCTTTTATTCATCCTTACTAGCCAATGTCCATTAATAGTCAATCATTGTGCTGTTGCTCTCTTTACTCTTTGgtgaagaaaaaggaaacattttctaATGTAACGCTTTTCTCTTCATTCTGTTACTATGACAATATTGTAGAACAAGATGATGGTTGCAGTTTTAGGTTTACTGTAAACTATAACGTACCCTTAACTACTAAACACTCTATGGTCATGATAGGCATAGATCTGATTACATATTTCCAAGGTACTTAGTAGAAAACCTTAAGACAACTGCTTCCATGGTTTCCATAGatcttatattttttataaaatgctttGTAATGTTCCATTAGTTAAAGGAAATATCTAGTACAATGCTGTTGCATGTTCAACTACACAAATTGCAGGAAGCTGATACAAAGTTTACAAAATGGAGTCCAAAACTTCGACATCAGATGAAAGCTTTTGTTACTttatgaaaatagtttttagcACTTTCATCATTCAATGTACAATTACACATATTGAAGTCCATGCTGTCTCCTACAAAGTAGGTTTCTGGAGTTACATTGTACCATAATATATAAACTTTATGGTGTATGAATAGTTTCTAACAGTAACAGCTGTAGTACtaatgcattaaataatgtACCCATGATgcttgaaaatataaataggtCTTACACCAACAGCAGTGGGGAACTCATGAAACTACCAATGTATGTCATCAGTTATATTATTGCTTTCCACATATTAATGCAGGACATGTGACGTGGAAATAACAATGGTAACAACTTccataaatattgtaatattgcaaAATATTACCATGGAACAGAGGTGTGATGAAGGAAGACACAACAAACGTGTctgttcattataattgtgtgcaCTCAGAAAAAGTGTTAAACTAGGTATGTACAAAGtatatttttctgtacaaaTAACCTTTTAAtcattgcaattatattttaagttttgcCAATTTGCACAATGTCCAGTGATGAATCAATCCCTGGTACCACATATGCTTCTTACTAAAACCCAAAAGTGGACAATAATGAGTTGTAAAGAAATTGaaccatattttaaataaacatttaaaaaaatgatcaaTGTAACTTTTGGGtgaagattaataaataatgtaaagaacATGCAgagaaatatgtaatatatatatcagggctgtcatttgataaaaaaaaatggcgattagttgattaatcggtAGATTAATTGGGCACTTATTAAAACAAGTGTAATAGTCTTTAAGCGGTTGTGCTATAACAATGCTTAACACAatggtaacaaaaataaaatagatatgtatattattatttaaaaaaacaaaaaacaaacactaaatcaCAGAGTGAGATTTTATCACAGATTATTTATCGCCCACCCAATGTGTGCGATTTTAGCGACTGATTCAGAGTTTGGAGATGGGGCCTCAATGCTTGAGAGCTatactaaataattataattataatgcaaaacaattacTGTTTAGCCGCAACATGGCAGAGGATTCTCCTTCCCCTCTCGGTGTTTGCTCGCAAACGATACTGTAAGCTGCGCACACTGcgcatttatttcaaatgaaacggaaaacctttactttgtcttcaatatttccTTCTCAATCCAAAGCTAGACTGTAGTTTTCCTATTAGCAGCttgtaaccctgcagtttgtgtgcAGATACCGTAGCTCTTGTGATGTAATTCACCTTCATAATTTAACACTGGAAGCGcagggctggtcagtttgaccgatttcatttgaaatctcTGTGTTgctgaatacactgtgcagaCCTGTtattgacttttcctaaatatatgtattaaatatgcctacgGTGTACCTCACCTGTCTAcggtctttcatgtgcttgaaaaacacatacattgtatagcattacaagtgtcttattgcaactgttgtcagattgagtggacacagTGATTACACTGCAGATGAACACTTGTCTCATTGTCTTAACTGTGCAGTGacgtgttaaaaaaaaataatacaaaaaaagtgctttgatgttatttatacctatcattttaatgttttatgttaatatctccatttaaatactgcatttgtactagttttaatttgataatttgaCATCCATTATACCACAGCGTTTAAAGACCTAtcggtgcttctagtgttaactgTATAATtgccagtcattataatgaaggaaaaaatTTAAATCTGCTCAGtcaaattgagaaaatattgatcgcCGATCAATTCATTAGATGATTAACAGACCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161007 lncRNA upstream 688688 14084286 ~ 14084930 (+) True G128402
TU160870 lncRNA upstream 1310136 13461666 ~ 13463482 (+) True G128294
TU160823 lncRNA upstream 1390974 13357491 ~ 13382644 (+) False G128255
TU160825 lncRNA upstream 1413880 13357491 ~ 13359738 (+) True G128255
TU160703 lncRNA upstream 1932610 12837651 ~ 12841008 (+) False G128171
TU161300 lncRNA downstream 136 14776859 ~ 14779441 (+) True G128663
TU161347 lncRNA downstream 294350 15071073 ~ 15073902 (+) True G128697
TU161406 lncRNA downstream 433630 15210353 ~ 15211325 (+) True G128747
TU161435 lncRNA downstream 549271 15325994 ~ 15326220 (+) True G128772
TU161494 lncRNA downstream 581920 15358643 ~ 15359014 (+) True G128815
AMCG00001087 mRNA upstream 45431 14696640 ~ 14728187 (+) True AMCG00001087
AMCG00001086 mRNA upstream 149767 14619523 ~ 14623851 (+) True AMCG00001086
AMCG00001088 mRNA upstream 171278 14522664 ~ 14602340 (+) True AMCG00001088
AMCG00001090 mRNA upstream 275999 14477042 ~ 14497619 (+) True AMCG00001090
AMCG00001089 mRNA upstream 300119 14404322 ~ 14473499 (+) True AMCG00001089
AMCG00001095 mRNA downstream 221294 14998017 ~ 15035581 (+) True AMCG00001095
AMCG00001094 mRNA downstream 284278 15061001 ~ 15070971 (+) True AMCG00001094
AMCG00001098 mRNA downstream 373552 15150275 ~ 15184392 (+) False AMCG00001098
AMCG00001102 mRNA downstream 453148 15229871 ~ 15241090 (+) True AMCG00001102
AMCG00001101 mRNA downstream 485028 15261751 ~ 15264010 (+) True AMCG00001101
TU160309 other upstream 2762193 11999664 ~ 12011425 (+) True AMCG00001002
TU159756 other upstream 4619431 10147857 ~ 10154187 (+) False AMCG00000949
TU159397 other upstream 6153423 8617199 ~ 8620195 (+) True G127134
TU157662 other upstream 13077371 1668845 ~ 1696247 (+) True AMCG00000729
TU157655 other upstream 13172979 1599696 ~ 1600639 (+) False AMCG00000723
TU161370 other downstream 393188 15169911 ~ 15174147 (+) True AMCG00001098
TU161504 other downstream 632389 15409112 ~ 15420880 (+) False G128823
TU162207 other downstream 3246337 18023060 ~ 18044251 (+) True G129365
TU162326 other downstream 3769170 18545893 ~ 18547915 (+) True G129453
TU162312 other downstream 3778428 18555151 ~ 18558174 (+) False G129442

Expression Profile