RNA id: TU161320


Basic Information

Item Value
RNA id TU161320
length 2078
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id G128676
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 14773562 ~ 14775639 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

taatcgccatttttttttatcaaatgacagccctgatatatatattacatatttctcTGCATgttctttacattatttattaatcttcaCCCAAAAGTTACAttgatcatttttttaaatgtttatttaaaatatggttCAATTTCTTTACAACTCATTATTGTCCACTTTTGGGTTTTAGTAAGAAGCATATGTGGTACCAGGGATTGATTCATCACTGGACATTGTGCAAATTGgcaaaacttaaaatataattgcaatgaTTAAAAGGTTAtttgtacagaaaaatataCTTTGTACATACCTAGTTTAACACTTTTTCTGAGtgcacacaattataatgaacagACACGTTTGTTGTGTCTTCCTTCATCACACCTCTGTTCCATGGTAATATTttgcaatattacaatatttatggAAGTTGTTACCATTGTTATTTCCACGTCACATGTCCTGCATTAATATGTGGAAAGCAATAATATAACTGATGACATACATTGGTAGTTTCATGAGTTCCCCACTGCTGTTGGTGTAAGacctatttatattttcaagcATCATGGGTacattatttaatgcattaGTACTACAGCTGTTACTGTTAGAAACTATTCATACACCATAAAGTTTATATATTATGGTACAATGTAACTCCAGAAACCTACTTTGTAGGAGACAGCATGGACTTCAATATGTGTAATTGTACATTGAATGATGAAAGTgctaaaaactattttcataaAGTAACAAAAGCTTTCATCTGATGTCGAAGTTTTGGACTCCATTTTGTAAACTTTGTATCAGCTTCCTGCAATTTGTGTAGTTGAACATGCAACAGCATTGTACTAGATATTTCCTTTAACTAATGGAACATTACaaagcattttataaaaaatataagatCTATGGAAACCATGGAAGCAGTTGTCTTAAGGTTTTCTACTAAGTACCTTGGAAATATGTAATCAGATCTATGCCTATCATGACCATAGAGTGTTTAGTAGTTAAGGGTACGTTATAGTTTACAGTAAACCTAAAACTGCAACCATCATCTTGTTCTACAATATTGTCATAGTAACAGAATGAAGAGAAAAGCGTTACATtagaaaatgtttcctttttcttcacCAAAGAGTAAAGAGAGCAACAGCACAATGATTGACTATTAATGGACATTGGCTAGTAAGGATGAATAAAAGAAGGACTGTATCATTTACACAATgcagtgtatattattatatgcaaAAATGGAATTGGTGCAAATTTGAgaacatgaagatgaaaatTAACAACATTATGTGATAGGAAtcctaaaaactaaaacaaaaacacagcactaCTTTCTGGTGagtttttatacaattagttCAATGTGGTATTTTCCCAAAGACAGCTGAAATGGAACACCTTGCTGTAATTCTTTTTTGATTTAATGATACGCGCAGAGAATTTTGAATGTTAGTGTCCGCACACCTGTAAACTGTACTTGTTTGCTTGTGAAGCATTGACTTCAGTTTTTAACCTTATGAAAGACAGAAAGTCTTCcgttatatataaaacactttcatacaatattaacacAATAAACATTATGTAGAACTGTAGAATTTCTTTAAAGAGTTTGTTATTCAGTTGATTTACTTTATCTTTTGTATACTATGGCTGTTTTACTAGCCCttcaaaatgattttttaagatgaaaatctgtatttttattgtactttgcaaaaccattcaaactgaaaaaatggATTATGAATTAATGCATCACTGTGCTGAAAAAAGAAACTACATAAATGTCTTAGAAACATTAATCTTTaccaattatttttatatgtcaGTGGATATGCAGAGTTTAAAGAGATTTTGTGGAAggacattatttcaaatatgtcgCTATATGTAAGcttaaaagtgtaaaacaatTCTGTACATGTACTCCTTTGTAATAATCTGAAGTATATGGATTACAATTTgcctataataaataatttctgaaaaAGTAAAGTCTAAAGAAGTTGGATTTTgcattaatgtaaatgtactattttcatgtaattaaaaagtTTTCTGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161262 lncRNA downstream 150429 14619572 ~ 14623133 (-) False G128631
TU161264 lncRNA downstream 152637 14619572 ~ 14620925 (-) True G128631
TU161249 lncRNA downstream 171232 14589025 ~ 14602330 (-) False G128624
TU161250 lncRNA downstream 171232 14589025 ~ 14602330 (-) False G128624
TU161251 lncRNA downstream 171232 14589025 ~ 14602330 (-) True G128624
TU161327 lncRNA upstream 181202 14956841 ~ 14957052 (-) True G128681
TU161353 lncRNA upstream 296279 15071918 ~ 15073870 (-) True G128703
TU161518 lncRNA upstream 588428 15364067 ~ 15433140 (-) False AMCG00001118
TU161528 lncRNA upstream 631129 15406768 ~ 15409154 (-) True G128839
TU161524 lncRNA upstream 633571 15409210 ~ 15413192 (-) False AMCG00001119
AMCG00001091 mRNA downstream 12295 14732692 ~ 14761267 (-) True AMCG00001091
AMCG00001093 mRNA downstream 145852 14624425 ~ 14627710 (-) True AMCG00001093
AMCG00001092 mRNA downstream 154554 14611686 ~ 14619008 (-) True AMCG00001092
AMCG00001081 mRNA downstream 620704 14149024 ~ 14152858 (-) True AMCG00001081
AMCG00001080 mRNA downstream 688776 14054414 ~ 14084786 (-) True AMCG00001080
AMCG00001096 mRNA upstream 5567 14781206 ~ 14991380 (-) True AMCG00001096
AMCG00001097 mRNA upstream 219611 14995250 ~ 14998306 (-) True AMCG00001097
AMCG00001100 mRNA upstream 399533 15175172 ~ 15181842 (-) True AMCG00001100
AMCG00001099 mRNA upstream 409473 15185112 ~ 15187506 (-) True AMCG00001099
AMCG00001105 mRNA upstream 431254 15206893 ~ 15209203 (-) True AMCG00001105
TU161258 other downstream 174992 14592699 ~ 14598570 (-) True G128628
TU160833 other downstream 1413792 13356983 ~ 13359770 (-) True AMCG00001061
TU160686 other downstream 2022046 12732184 ~ 12751516 (-) True G128160
TU159975 other downstream 4073214 10697707 ~ 10700348 (-) False AMCG00000960
TU159787 other downstream 4495351 10274687 ~ 10278211 (-) True G127443
TU161398 other upstream 403602 15179241 ~ 15180322 (-) True G128741
TU161519 other upstream 588428 15364067 ~ 15433469 (-) True AMCG00001118
TU161636 other upstream 784706 15560345 ~ 15909126 (-) False AMCG00001127
TU161965 other upstream 2397231 17172870 ~ 17173677 (-) False AMCG00001156
TU162350 other upstream 3749253 18524892 ~ 18525543 (-) False AMCG00001193

Expression Profile