RNA id: TU161353


Basic Information

Item Value
RNA id TU161353
length 1953
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G128703
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 15071918 ~ 15073870 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCACCCACATTACtatgttatttaaatcatattaagAGTCTAATTATATAGTCAATCAAATGAACTGAAATAGATTTAAAGAAATACCAATCTCATATAATACACTGAGTCTATAGtcatattagtaataataaatgcagTGGGTTTTTGAATGTAAGAATGCTTAATTGCAGAAGGCATCCCTTGTTTTTTGCTATCTTTATACTATGTCACCATATGTTGATGTGGTATTGAAGGAGACAGCATAAGAtgaacatgtttgtgtttatattgatCTATAATTGCAtgataatatacacacacatcattgCAACAATGCCCACATTCagtgaaaaacagattttgctCAAAAATATGTTAACATCTGGAGAAAGATGTACAAATTACATTCATACAGCAGATAACAGCCCTAGAGAGAGAGGATTCCCAAtgatacatacagtacagtcGTTACACATGGACACTGacttcagaagaaaataaaacagcaactaaataagaaaaaaatatacaatttaaggTTAATGTTCACTTAAATGTCAGCATACAGCACACTTGTGTGTGAAAGCctcaacacatttcaaaattcaGTCCCTACACTGTCCTGCAGTTCTGACACGTCGGCCATGCATAAACAGCAAACACCTTCTGCACAGCTTGAGTTAAGAAATGGTTTGATGTACAcctaaaacacacataaaactatgttttggtttatttgtgtgGTGCTgagctgtaaatgttttaaatattttaagtatatatattatatatatgttaattgCATCATAACAGAGTTTATATATCATTTTGTTatgttcttcattttttaaattgagtgaATACAAGGCTTTTTGTGAGCGGTGAACATATTTTTGTTGGACTGGAAAGGGTAAGATGTAAtttgcatgtattatttatgtgaattctattttatgatattttttgttgtatcatattattttatttggaaataaacAGTTCTTCAAGTCCCTCCCCAGTAACATTCTAGTTGCTtcggaaaaaaacaaaacacaacagacaaGCTCTGCCAAATGTCTGTATAGTAAAGCTTTCCAGATTCATGTAGATTTCATTTTTACTGGCAGCCAACAGGAGATCCTTTTCTCATtattacagtgaaaataaaaactatacatattttaaaatcacttccAATCACATTCAATAAGCATATAAATACACTTGACCAATActtgtgcatgtatatatacatatagatatatatacacacccacacacatatgaacacacacacaaaatcatatttataatatcTGCTTTCTTTCCAGCATTTGGACATGAAACAACTTGAATGCTTAAACATAAATTCAGATGATACAGTTTTCGGAAACAAGAGAAATACATGTGCCAGACataagaaatagaaaaagaaaatcagaacaCAGTTAGGGAATTGACCTAACCCCTGAGGGAATGTGCGAAGATTAATTTCCTCGGGAAGATGATATAACTTTAAGGCAGTGCTAGAATGAATTAGGAGTATTATCTTCACCCTAGGTGTAGAGTTATGTGTGACAGTAGATAATTTGTCAGACAGTCTTTGCTGGATTCTGGCAAGCTATGGAATCTCtacttttattatgttttacaagACAGCACGAATACGTGCAAAACACAAAGTGGCACAAGAGACTTCATTGAAACCATATGACTAAATCAGTAATTTCGCTTCCTGGCCGGTCAAGAACATTCTGTACACTGATTTCAGCCCTGGATGTCTGAACGGTGTCATGGTTTTAAACAATGTCTTCCTttatgccttttatttttcataaaaaaaacttaaaccacatatatttaacagatcctgtttttaataatataccTAGTTTGAATGACTAGCAGTGTATAAGGAATATATTTAGTCGgtacctttaaaataatataaaatattgaaaaacaactgAC

Function

GO:

id name namespace
GO:0009055 electron transfer activity molecular_function
GO:0022857 transmembrane transporter activity molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0022890 inorganic cation transmembrane transporter activity molecular_function
GO:0015002 heme-copper terminal oxidase activity molecular_function
GO:0015318 inorganic molecular entity transmembrane transporter activity molecular_function
GO:0015075 ion transmembrane transporter activity molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function
GO:0016675 oxidoreductase activity, acting on a heme group of donors molecular_function
GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor molecular_function

KEGG:

id description
ko00190 Oxidative phosphorylation
ko04260 Cardiac muscle contraction
ko04714 Thermogenesis
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05016 Huntington disease
ko04932 Non-alcoholic fatty liver disease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161327 lncRNA downstream 114866 14956841 ~ 14957052 (-) True G128681
TU161320 lncRNA downstream 296279 14773562 ~ 14775639 (-) True G128676
TU161317 lncRNA downstream 296279 14773634 ~ 14775639 (-) False G128676
TU161262 lncRNA downstream 448785 14619572 ~ 14623133 (-) False G128631
TU161264 lncRNA downstream 450993 14619572 ~ 14620925 (-) True G128631
TU161518 lncRNA upstream 290197 15364067 ~ 15433140 (-) False AMCG00001118
TU161528 lncRNA upstream 332898 15406768 ~ 15409154 (-) True G128839
TU161524 lncRNA upstream 335340 15409210 ~ 15413192 (-) False AMCG00001119
TU161525 lncRNA upstream 335340 15409210 ~ 15413192 (-) False AMCG00001119
TU161589 lncRNA upstream 388847 15462717 ~ 15463789 (-) True G128890
AMCG00001097 mRNA downstream 73612 14995250 ~ 14998306 (-) True AMCG00001097
AMCG00001096 mRNA downstream 80538 14781206 ~ 14991380 (-) True AMCG00001096
AMCG00001091 mRNA downstream 310651 14732692 ~ 14761267 (-) True AMCG00001091
AMCG00001093 mRNA downstream 444208 14624425 ~ 14627710 (-) True AMCG00001093
AMCG00001092 mRNA downstream 452910 14611686 ~ 14619008 (-) True AMCG00001092
AMCG00001100 mRNA upstream 101302 15175172 ~ 15181842 (-) True AMCG00001100
AMCG00001099 mRNA upstream 111242 15185112 ~ 15187506 (-) True AMCG00001099
AMCG00001105 mRNA upstream 133023 15206893 ~ 15209203 (-) True AMCG00001105
AMCG00001106 mRNA upstream 140435 15214305 ~ 15228862 (-) True AMCG00001106
AMCG00001104 mRNA upstream 167782 15241652 ~ 15251730 (-) True AMCG00001104
TU161258 other downstream 473348 14592699 ~ 14598570 (-) True G128628
TU160833 other downstream 1712148 13356983 ~ 13359770 (-) True AMCG00001061
TU160686 other downstream 2320402 12732184 ~ 12751516 (-) True G128160
TU159975 other downstream 4371570 10697707 ~ 10700348 (-) False AMCG00000960
TU159787 other downstream 4793707 10274687 ~ 10278211 (-) True G127443
TU161398 other upstream 105371 15179241 ~ 15180322 (-) True G128741
TU161519 other upstream 290197 15364067 ~ 15433469 (-) True AMCG00001118
TU161636 other upstream 486475 15560345 ~ 15909126 (-) False AMCG00001127
TU161965 other upstream 2099000 17172870 ~ 17173677 (-) False AMCG00001156
TU162350 other upstream 3451022 18524892 ~ 18525543 (-) False AMCG00001193

Expression Profile