RNA id: TU161502


Basic Information

Item Value
RNA id TU161502
length 2546
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G128823
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 15409112 ~ 15420880 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atttgtttaaacagCAATCATAGCAACTTAAACTATATTGAATATGTAGTCTAAGAAGGtgcaagattattattatatttactatTACAATTAGTATGGTTTTAGAAGCTGGATGTTgtagaaaatatacattagaaccaaaacagaaaatgaaatacacagaATCAGCCAGGTCTGAAAAGATCTGCTACTGAAATtagttttacttaaaaaaaaactccagacTCATCGATTGTATTCTGCAAAGTGTAGAAcctaaaataatacagtaaactaAATGTTACTGAAATACTGTATGCTAGGtctcttgcttttctttcccAGCTGTGAACTTTAAACTGTCACCACAGTGATGTATTTCAGATTTAAGAAATAAGACATTAATtgcagtttgaaaatgtaaattttaataACTTGacaaagttatattttaattaacagatGAAATAATGAGTAAACACCCACAATATAACCCCCAAGGTGAAATACGTGTTTTCTTAACTGTTATAAATACCTAGTgttaccattttaatttctaaCTTCTAACTTTTAACTTCCCTTTATCAGAGTTAAAAGAGAAATActgaatacatgaaaaatacattctgaaagaAGTAAAAACAGTATATGACTCTGCAACATTACGGGAATATGCAGGTTTTAGAAACACCTTTTGCAAATCACTCATAATATGCAAGAAAAATGGaagcaacatttatatttatatcacaatattaatatatttaattaatttctaatgatgggaatatttttaaaatacatattgagtAGAGTGCAGgtaaaaaatagaacaaaaaacacttttacatataaaaaagtatattaaaatcCTTTCAGAAAACCAAAACCCCAAAACCCGAAAAACCCAAAGGTAATTGAGTGGCTTGTCCTGTTCTTCAGAAGAGCACCTCATTTAGGCATCTGCAGAACATGGCTGTATAATCAGAGCTGGACAAAGGAAGAAGAACTTTCAACATTGTTCACAAATACAGTTTAcatctcttttctttctctatgcatatttatgtgtattaatGAGCCTTCTGAGCATCTGTATTTCAGAAGCACATGTAATTTGGTCACTTGAAGTCATATTAGAAGAAGGTTGCTGCTGTTTTCCccacaattattcaattaaccaAATGTACAAATCACACTGTAACAATCGTGCTGCTCAGAGTTGTATGTTTTAGGTGGAACTCATCAATTGTTAACATTAGTCTGAAAATATGGATTGAAAGTTATAAAAAGTGCcctaattgtttaattgctgGTAGTATAGATGCCATTGTTACCCCTCAGTGGTGCCCATGGTGCCCGTGGTGCCCATGGTGCCCATGGTGCCCGTGATGCTCGTGGTGCCCGTGGTGCCCGTGGTGGCCATGGTGCTCATACATGTTGTGACCATGGCCATATCCATAATTTTGCCCAATAAAAGGCTGATTGGGAAATGGCTGGTAATATCCAGGTTGGCCAAGGGCATAAGGCTGGAGACATCCATCTGGCCCTATGAAATAGCCCTGAGGGATCTGGGGCAAGCCAGATTGATGGTGGTGTCCTACAAGGAAAGATTATTGACTAATACAgtaaatgctgtaaaatgtactttctttATACTGTCAATACATTATTCACACTAAAGGATAAAACTACACTGGTTGTCCTTCTTCAAACATTTAATACTTGTAAGGGTTGCAGAATTctaataacttaaaaatgttaattattttgaagaGTGCTGATACATAGTATTCATTGTTCTTGGAGTAGAAAACAAGGACACATCTGGATGTTTTCAAGTGACACTGAATGAGTTAGAAACAAGgccaaataatgtattaaacttTCCTATACAATTCAGCAATTTAATTccactaatactaataaaattTTATGTTGTGAGTGTGAATAAGTGATTTAGGGTAATAGAAAATATTACCTGAATGGTGGCCccacattttgaattattttacctAAAAGTTGGGGTGGAACAAAACGTATGTAATTGTCAAAATTCAAGTTATTGAAAAaagtgaatacaaaaaacaaaatcaaacaaacgtaataaagttattttgaatgcatttgacatgaaacttaaatatatacagttttttctttcttcgaTATCTATGGAAGGTGCTCCCACAGCAATGACGTAAAGAGgcacattttttccattttgttttgttgttttttaagttgttgCAAATACATACGTATGGAAATTCAACTTGAAATTGAAAACTGTTCTGGCCCATTGCCAGGTCAAGTGTTAAGTTACCAGCTCTAGCTGCTCTCTTCACTGGCTCAGTGAGGTGGATATTTTCTCTTTTGGGCTCCAAAACAGTGCTCAAATATGCCCAATTTGGTATTTTTAGCTGGAGTCTGTTAGTCAAAGACAGGTCATAATCTCTCAGGTACATATAGATAAAATAAAGAGGATTGTACCCGTCAATCTTCACCTTGATGTAACCAGCATGTGAACACAACTGGATGAACCTTTACAGTTACATTTACAAGag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161494 lncRNA upstream 50098 15358643 ~ 15359014 (+) True G128815
TU161435 lncRNA upstream 82892 15325994 ~ 15326220 (+) True G128772
TU161406 lncRNA upstream 197787 15210353 ~ 15211325 (+) True G128747
TU161347 lncRNA upstream 335210 15071073 ~ 15073902 (+) True G128697
TU161300 lncRNA upstream 629671 14776859 ~ 14779441 (+) True G128663
TU161512 lncRNA downstream 70 15412780 ~ 15413107 (+) True G128827
TU161551 lncRNA downstream 47822 15460532 ~ 15462511 (+) False AMCG00001114
TU161548 lncRNA downstream 50003 15462713 ~ 15463853 (+) False AMCG00001114
TU161624 lncRNA downstream 153691 15566401 ~ 15886602 (+) True G128919
TU161635 lncRNA downstream 468645 15881355 ~ 15882299 (+) True G128928
AMCG00001112 mRNA upstream 57752 15351085 ~ 15351360 (+) True AMCG00001112
AMCG00001109 mRNA upstream 85473 15318950 ~ 15323639 (+) True AMCG00001109
AMCG00001108 mRNA upstream 90674 15295104 ~ 15318438 (+) True AMCG00001108
AMCG00001103 mRNA upstream 126009 15269252 ~ 15283103 (+) True AMCG00001103
AMCG00001101 mRNA upstream 145102 15261751 ~ 15264010 (+) True AMCG00001101
AMCG00001114 mRNA downstream 48357 15461067 ~ 15463358 (+) True AMCG00001114
AMCG00001113 mRNA downstream 63114 15475824 ~ 15481816 (+) True AMCG00001113
AMCG00001121 mRNA downstream 74443 15487153 ~ 15499125 (+) True AMCG00001121
AMCG00001122 mRNA downstream 98801 15511511 ~ 15518433 (+) True AMCG00001122
AMCG00001123 mRNA downstream 105763 15518473 ~ 15524200 (+) True AMCG00001123
TU161370 other upstream 234965 15169911 ~ 15174147 (+) True AMCG00001098
TU160309 other upstream 3397687 11999664 ~ 12011425 (+) True AMCG00001002
TU159756 other upstream 5254925 10147857 ~ 10154187 (+) False AMCG00000949
TU159397 other upstream 6788917 8617199 ~ 8620195 (+) True G127134
TU157662 other upstream 13712865 1668845 ~ 1696247 (+) True AMCG00000729
TU162207 other downstream 2610350 18023060 ~ 18044251 (+) True G129365
TU162326 other downstream 3133183 18545893 ~ 18547915 (+) True G129453
TU162312 other downstream 3142441 18555151 ~ 18558174 (+) False G129442
TU162456 other downstream 3475681 18888391 ~ 18889724 (+) False AMCG00001203
TU162506 other downstream 3630594 19043304 ~ 19142145 (+) True G129594

Expression Profile