RNA id: TU161589


Basic Information

Item Value
RNA id TU161589
length 1073
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G128890
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 15462717 ~ 15463789 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtacacacacagtaccTCACATGTTCTTAATAAGGAGGTACTACCAAGGATTAAAGAAGTGGCAGTAAATTGAAATTGAGGGTCAGTCAATAAAACGGTTTTGATCTCTTTATTACTGTTTATTAAATAGCCCAAGTTGTAAGTTTTAAAACCTTGCCACTGATACTATGCTACTGTCTCCTGTATTGAGAAGTAATATTAAAGCAAGATTTATtcttgtatgtgttttaattggAGAAAAGTGTAAAATGACGACCCTTTTGTCTCTGTAGACATGAAAGTTCTatgttcatgcatttaaaagtggtgcaatatttattttgggtaGTTAACTCATTGGTTTGCTTAAGCTTTTATTAATGTGGTCCCCTCTGTGCTTGGGATTTCCAACACACTGGGGGTTTCCATTACACCTTAGGGTTACTTGTGcctgttatttgtgtgtggtttggtgttacttttttttttttttttttttttttttttattcttcttttaaaacCTTCTATAATAAGCAAACATGATGGAGGCAGACCTTTCTAAGCATTAGCCTTTTCAATGGATATCCTCAGTGCATAAAAACCTGGCTCTCAGTACagtagttttttctttttttctttttctacacAGCTTTACTTTGTAAAAGTTGCACAGCCAATttggttaaaatgtatttgttgaaaattaaacaaatagttAATGTAAGTAAAATGTGATTAAGTTATATACTTCTTAAAGTCGTAAATCCTACTGAGGCTTCCAactgatctatttattttagttgaagtTTTGACTATTCGTTGTGTGGCAATTCAGTCTTGTCCTGATCAGTCACGTTCCCTTTCTTTATCTAATGTGGCCAGTATAAGTTTTATTTGCAAGCATATACCCATTGGTGTCATCACTGGTTCTGCTCAGTTCCAACCACTCTGCCTGCATTAAGCTGAGTAAATGAAGATGTCATCGTGAAAAGTATGAGTGAGTTCTGCAGTGTTGAAAGCTTAGCTTGCATACATGTCAAGCATCCAGTATTTGACTATCTCCCCAagtctcattttaaaataaaatcaatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161518 lncRNA downstream 29577 15364067 ~ 15433140 (-) False AMCG00001118
TU161524 lncRNA downstream 49525 15409210 ~ 15413192 (-) False AMCG00001119
TU161525 lncRNA downstream 49525 15409210 ~ 15413192 (-) False AMCG00001119
TU161528 lncRNA downstream 53563 15406768 ~ 15409154 (-) True G128839
TU161353 lncRNA downstream 388847 15071918 ~ 15073870 (-) True G128703
TU161602 lncRNA upstream 55827 15519616 ~ 15559349 (-) True AMCG00001127
TU161603 lncRNA upstream 90497 15554286 ~ 15559349 (-) False AMCG00001127
TU161707 lncRNA upstream 560369 16024158 ~ 16027580 (-) True G128976
TU161795 lncRNA upstream 889646 16353435 ~ 16378315 (-) True G129033
TU161811 lncRNA upstream 1056392 16520181 ~ 16574599 (-) False G129042
AMCG00001115 mRNA downstream 2212 15446449 ~ 15460505 (-) True AMCG00001115
AMCG00001117 mRNA downstream 16790 15435954 ~ 15445927 (-) True AMCG00001117
AMCG00001119 mRNA downstream 30387 15409170 ~ 15432330 (-) True AMCG00001119
AMCG00001118 mRNA downstream 84783 15364767 ~ 15377934 (-) False AMCG00001118
AMCG00001110 mRNA downstream 120597 15338333 ~ 15342120 (-) True AMCG00001110
AMCG00001116 mRNA upstream 99 15463888 ~ 15474968 (-) True AMCG00001116
AMCG00001124 mRNA upstream 38027 15501816 ~ 15511478 (-) True AMCG00001124
AMCG00001126 mRNA upstream 66319 15530108 ~ 15546624 (-) True AMCG00001126
AMCG00001127 mRNA upstream 94170 15557959 ~ 15567260 (-) False AMCG00001127
AMCG00001133 mRNA upstream 448293 15912082 ~ 15913139 (-) True AMCG00001133
TU161519 other downstream 29248 15364067 ~ 15433469 (-) True AMCG00001118
TU161398 other downstream 282395 15179241 ~ 15180322 (-) True G128741
TU161258 other downstream 864147 14592699 ~ 14598570 (-) True G128628
TU160833 other downstream 2102947 13356983 ~ 13359770 (-) True AMCG00001061
TU160686 other downstream 2711201 12732184 ~ 12751516 (-) True G128160
TU161636 other upstream 96556 15560345 ~ 15909126 (-) False AMCG00001127
TU161965 other upstream 1709081 17172870 ~ 17173677 (-) False AMCG00001156
TU162350 other upstream 3061103 18524892 ~ 18525543 (-) False AMCG00001193
TU162357 other upstream 3092041 18555830 ~ 18558217 (-) False AMCG00001196
TU162458 other upstream 3424976 18888765 ~ 18889757 (-) True G129566

Expression Profile