RNA id: TU161647


Basic Information

Item Value
RNA id TU161647
length 366
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G128939
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 15921674 ~ 15922039 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aCAGCACATtcgtttttctaggtctatggtgttgttaggatttactgacagatataattgtgtgtcgtctgcgtaactgtgaaagttaatattatgtcgtcgaatgatatcacctaaagggagcatgtataatgaaaaaagtataggtccgagaactgagccctgtgggactccgtacctaacctcagttaaatttgagtggttctcgttaatctgtacatattggagtctgtttgacagatatgatttaaaccatgaaagcACATTGCGAGATAGGCCAATACGGTTTTCTAAGCAGTGtaacaagattttgtggtcgattgtgtcaaaagccgcacttaagtctaataaaataataacactggc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161646 lncRNA upstream 100 15921373 ~ 15921574 (+) True G128938
TU161624 lncRNA upstream 35072 15566401 ~ 15886602 (+) True G128919
TU161635 lncRNA upstream 39375 15881355 ~ 15882299 (+) True G128928
TU161548 lncRNA upstream 457821 15462713 ~ 15463853 (+) False AMCG00001114
TU161551 lncRNA upstream 459163 15460532 ~ 15462511 (+) False AMCG00001114
TU161649 lncRNA downstream 993 15923032 ~ 15924810 (+) True G128941
TU161684 lncRNA downstream 100219 16022258 ~ 16062179 (+) True G128958
TU161844 lncRNA downstream 967599 16889638 ~ 16892361 (+) True G129071
TU161853 lncRNA downstream 1222151 17144190 ~ 17147069 (+) True G129080
TU162040 lncRNA downstream 1565353 17487392 ~ 17550791 (+) True G129221
AMCG00001128 mRNA upstream 121517 15754698 ~ 15800157 (+) True AMCG00001128
AMCG00001125 mRNA upstream 276004 15630714 ~ 15645670 (+) True AMCG00001125
AMCG00001120 mRNA upstream 391715 15525846 ~ 15529959 (+) True AMCG00001120
AMCG00001123 mRNA upstream 397474 15518473 ~ 15524200 (+) True AMCG00001123
AMCG00001122 mRNA upstream 403241 15511511 ~ 15518433 (+) True AMCG00001122
AMCG00001129 mRNA downstream 9687 15931726 ~ 15951003 (+) True AMCG00001129
AMCG00001130 mRNA downstream 31676 15953715 ~ 15958009 (+) True AMCG00001130
AMCG00001135 mRNA downstream 67133 15989172 ~ 16002152 (+) True AMCG00001135
AMCG00001134 mRNA downstream 85966 16008005 ~ 16008487 (+) True AMCG00001134
AMCG00001138 mRNA downstream 354396 16276435 ~ 16285796 (+) True AMCG00001138
TU161504 other upstream 500794 15409112 ~ 15420880 (+) False G128823
TU161370 other upstream 747527 15169911 ~ 15174147 (+) True AMCG00001098
TU160309 other upstream 3910249 11999664 ~ 12011425 (+) True AMCG00001002
TU159756 other upstream 5767487 10147857 ~ 10154187 (+) False AMCG00000949
TU159397 other upstream 7301479 8617199 ~ 8620195 (+) True G127134
TU162207 other downstream 2101021 18023060 ~ 18044251 (+) True G129365
TU162326 other downstream 2623854 18545893 ~ 18547915 (+) True G129453
TU162312 other downstream 2633112 18555151 ~ 18558174 (+) False G129442
TU162456 other downstream 2966352 18888391 ~ 18889724 (+) False AMCG00001203
TU162506 other downstream 3121265 19043304 ~ 19142145 (+) True G129594

Expression Profile