RNA id: TU161684



Basic Information


Item Value
RNA id TU161684
length 740
lncRNA type inter_gene
GC content 0.31
exon number 2
gene id G128958
representative True

Chromosome Information


Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 16022258 ~ 16062179 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


AGAAGAGGAAACGTGCAATTAActgatacttttttttatttacaccaCGAGAATAACAAGCTGTCATAATGTGGTACAAAATACTGGATTCCTAATAACTCTCTTGAAGATGCTGGAACTGTCAAAGAAAGACACCACTGGCCAGTTTGAAAAAGAAATCAGagaaaaggaaatcaaatatATCTGTTTAAGTCCACCAAGCAAACAAAGGACCAACAAGAAATAATATTAGAGCTAAAACAATGAATCCTACAATCACCAATACATAAGGTTCACATATGAACTAGTTGTtgtgaataaaaatacagaacaatagGATTTCTGGCAATGGTGACATTATTCTTGGAGAGTGCCTGGTGTGAAAAGGGTACAGTAGATTAAACTGCCAAAGTTacacattagtattgtgttttaaatgacacGTCTAAATTGTCTTTAAGACTGTATAAAAGGATGTGTTAGTGTATTAAACATACAGATGTTACAGATAAAAGTTGATAAACCCTTTGCAAATACCATAATGGGGTATGCAAACAttagcttaaaaaaatgtacaaagttTATAATATATGACTGGTTTAAGCTGCATACAAATTGGAGGGGGTATATGTTGTATATCTCTTATTGATGTTTTCTTAAATTCAGCATATTtgacagtattattatttgcaaaGTGTTCAAACGTCTTTccatgtttgtatatatatatatatatatatatatatatatatatatacaca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU161649 lncRNA upstream 97448 15923032 ~ 15924810 (+) True G128941
TU161647 lncRNA upstream 100219 15921674 ~ 15922039 (+) True G128939
TU161646 lncRNA upstream 100684 15921373 ~ 15921574 (+) True G128938
TU161624 lncRNA upstream 135656 15566401 ~ 15886602 (+) True G128919
TU161635 lncRNA upstream 139959 15881355 ~ 15882299 (+) True G128928
TU161844 lncRNA downstream 827459 16889638 ~ 16892361 (+) True G129071
TU161853 lncRNA downstream 1082011 17144190 ~ 17147069 (+) True G129080
TU162040 lncRNA downstream 1425213 17487392 ~ 17550791 (+) True G129221
TU162082 lncRNA downstream 1629328 17691507 ~ 17692526 (+) True G129255
TU162181 lncRNA downstream 1909830 17972009 ~ 17976936 (+) True G129343
AMCG00001134 mRNA upstream 13771 16008005 ~ 16008487 (+) True AMCG00001134
AMCG00001135 mRNA upstream 20106 15989172 ~ 16002152 (+) True AMCG00001135
AMCG00001130 mRNA upstream 64249 15953715 ~ 15958009 (+) True AMCG00001130
AMCG00001129 mRNA upstream 71255 15931726 ~ 15951003 (+) True AMCG00001129
AMCG00001128 mRNA upstream 222101 15754698 ~ 15800157 (+) True AMCG00001128
AMCG00001138 mRNA downstream 214256 16276435 ~ 16285796 (+) True AMCG00001138
AMCG00001142 mRNA downstream 224261 16286440 ~ 16290299 (+) True AMCG00001142
AMCG00001139 mRNA downstream 244152 16306331 ~ 16311402 (+) True AMCG00001139
AMCG00001140 mRNA downstream 268690 16330869 ~ 16332913 (+) True AMCG00001140
AMCG00001141 mRNA downstream 284539 16346718 ~ 16354498 (+) True AMCG00001141
TU161504 other upstream 601378 15409112 ~ 15420880 (+) False G128823
TU161370 other upstream 848111 15169911 ~ 15174147 (+) True AMCG00001098
TU160309 other upstream 4010833 11999664 ~ 12011425 (+) True AMCG00001002
TU159756 other upstream 5868071 10147857 ~ 10154187 (+) False AMCG00000949
TU159397 other upstream 7402063 8617199 ~ 8620195 (+) True G127134
TU162207 other downstream 1960881 18023060 ~ 18044251 (+) True G129365
TU162326 other downstream 2483714 18545893 ~ 18547915 (+) True G129453
TU162312 other downstream 2492972 18555151 ~ 18558174 (+) False G129442
TU162456 other downstream 2826212 18888391 ~ 18889724 (+) False AMCG00001203
TU162506 other downstream 2981125 19043304 ~ 19142145 (+) True G129594

Expression Profile