RNA id: TU161707


Basic Information

Item Value
RNA id TU161707
length 2814
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G128976
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 16024158 ~ 16027580 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttgtgtATTTACTATATGTTCTGTTCATAGTAGAtttatatatggaaaaaaatatattatatatatatatataaaaagatgcAATTTGTTTAAAGGCGATATACCCATATATCTCAACCTAGGCTGGTGATGCTCTTTCTGGTATGTTTTAACTGCATTGTTAAAGGCTGCCATGGAGTACATatagttcttttgaaagctatTCTTCCTATCCCTTCATCTCTTTCCCTGTTTGTCTATTTCCAATGTTTCCAATTTTATTTCCTCAATACCAAagtctgcatttttaaatagagCTCCTTACAGtggaatttgatttaaaaaacacacacattagcaTTGAACTAACTGATTCCCTCGGAGTAATGAAATTCAAAGGGAAAATGTCTTAGCACCTTATAAGCGCCACCTCTTTTAAATTCAGCATGTTTTGCTAGAGGTGGAATTGAAGCCCTGAGGCTTTGTGTAGTATTGTGCTGATGCTTATCACTGTCAAAAATGAAAGGTCACAAAATATGTTACAGACTTCCGAAAAGCATTTCTTAAACTGTCTGTGCAACTATTTAATATGACTGGAGTAAATTAGCAGGGATGTGTTGCctagcaaaaaaataattaaggcCACTCACTGTGCAtccaattatcttttttttttttccagtattaaaataagcattgcccatattacatatataattcaAAGAAACATATCTGAATAACCTGAACTGAATCTTAAATATTTACCACTTTGTGTAATCCGATGCTATTTTTCTATGGTGATTTTAAGGAAGCATTACAGACTAGTGACACTGAAGTCAATCTTTTGTATGTTATGAACTGTCTGTCTTTGCCGCCTTCATATTTGCTGTTTTCCAGCATGTGGtattattaagaaaatgaaGATACTGCTCTTTCTGAGGTTATAACCACCAGTTAACTTTGTATCTAGAACAAACAGAAGTGTTATGGTACTAGATAACCCTTCACAGTTTTAACCTTAAAAGGGTTCATCCCCTCTGCATGTAGTCCTTTAGTTGACAATTTCCAAATTGACAATATCCTTCTTTCTTAATTTTCATCCAGCTCATTTTCCTGTAACTTCATATTGACCTGCTATGCttgttttttacttaaaatgtttaaaactataaaacactgaaagaagCTTTGTGGGTTTCTGTCTCTGATATCCAGGATCTGATTTCAGCTCTTCTCTTTTCGAAATGCCCTACACGAGCATTTTCATCCATACATGAATAAGCAACAACAATATAGAAGCATGCGACTAACGGACTGAGACACATACATTTCAACTACACTGTTCAAGTGCAGTAACAAGCTGAGATAATGCAGAACTAGTGACTTACTTAACAATCCCCCCTGATGTTCATATTAGTATGGTTGTTTAATTTGGATACATTTGTacatacaatttttttatttttttttcagtagtaTTGATTTACGTTCAGCTTGGTCTAATTTGCATTCAGCAAAAGAGCTTTACCCTTGCCTTGCATTTTTAGAAGCCAAACATACCTGTAATAACTGTAGACATTTCAACCGACATTTATATAACCCTGCAGTTGATTTACTAGGGAGCCAGTGAAATGCATCTGTGAAAGATGAACTTAATGAAAAAGTCTTAAACATCATCCAGTCTGTGGAGAGGTCCAGTTCAATTATGTTTACAGCCCTGCAACACCCTCCTCGTGAGCCTTTTAATTTCTTATCAAAAACTGTAGCTGAACTTAACGCCATGTATTCCCCGTGCCAGCCTATAAAAACAGAGCTTTGGGGGAACATTTCGCAATAACAGTCTGAGCAATGGCAAACACtgccattgtatttttttactctaTTTCTTTTCAGTCTATCTGGATTACAATCCCTGTGTCcagatatttgtgtttgtttgtttgttttttaattcttaatggtgataaagaaaacattccgattgtttttagttatatatatatatatatatatataaacaatgccATTCCTCTTTTTTTGCCATAGACACTTGGCCCATTATTGTTTTTCCTAAGGGCCTTGGTTAAtttcttaatgttttcctttaccACCTCTGTAGTTTTCTGCATGGTTTGTGTGTTGGCATGCCTGATGTTTGTCCTTGTAACATATTTGCACACCAGAATAGCACTGGAGGACTGAAATATTGTATGGCATCTGCAAGAACAGTGATGGGAcatttcttgtgttttaatttttttcattatttttatgttttcctgtCAGAAGAATGAGAAAGTGAGATGCTCTTTGTATCTTCAAAAATCCAACAGAtgtgctttttaattgtataaaaaacaaaacaaggaaaaaactgaactacttaaacatttgaatattttacaaaaccttTATCTAGCACTTATGGCATACAGACAAtagattttattgtatttatgtagaAACTGTTTTAGGtaaactacacaacacacaaaacgttAGACTGCCTTTGTTTCTTTGGGGTATTTTTGGAGGGGTGGGCAGGGGGCATTGGGCGGGGGGAGGGTGATGAAAACTGTACTTGAAACATCTGGAGATACCAGGTGTTTGATAGCTACATCACCTTAAGATTGTCTAATCCACTTCAGCCAGTAATACGTGTGACCACTGTGGTTTAAAAGCAATTCTTGGTTTACAAttgtaagaagaaaaacaaacgttttcttttattttttggtttcttttgggtttttattttttcccattgtTACAAAGCAGAACTTTTATTGGGACCTTTGCTCTGACGTTTGTCTTTGACATCAACTATAAAGTATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161602 lncRNA downstream 464809 15519616 ~ 15559349 (-) True AMCG00001127
TU161603 lncRNA downstream 464809 15554286 ~ 15559349 (-) False AMCG00001127
TU161589 lncRNA downstream 560369 15462717 ~ 15463789 (-) True G128890
TU161518 lncRNA downstream 591018 15364067 ~ 15433140 (-) False AMCG00001118
TU161795 lncRNA upstream 325855 16353435 ~ 16378315 (-) True G129033
TU161811 lncRNA upstream 492601 16520181 ~ 16574599 (-) False G129042
TU161809 lncRNA upstream 541463 16569043 ~ 16574599 (-) True G129042
TU161837 lncRNA upstream 848731 16876311 ~ 16880485 (-) True G129065
TU161912 lncRNA upstream 896131 16923711 ~ 16995408 (-) False G129125
AMCG00001131 mRNA downstream 97388 15922391 ~ 15926770 (-) True AMCG00001131
AMCG00001132 mRNA downstream 106547 15916191 ~ 15917611 (-) True AMCG00001132
AMCG00001133 mRNA downstream 111019 15912082 ~ 15913139 (-) True AMCG00001133
AMCG00001127 mRNA downstream 456898 15557959 ~ 15567260 (-) False AMCG00001127
AMCG00001126 mRNA downstream 477534 15530108 ~ 15546624 (-) True AMCG00001126
AMCG00001136 mRNA upstream 65 16027645 ~ 16102748 (-) True AMCG00001136
AMCG00001137 mRNA upstream 232816 16260396 ~ 16275474 (-) True AMCG00001137
AMCG00001143 mRNA upstream 269448 16297028 ~ 16305683 (-) True AMCG00001143
AMCG00001144 mRNA upstream 284104 16311684 ~ 16321736 (-) True AMCG00001144
AMCG00001145 mRNA upstream 367455 16395035 ~ 16399430 (-) True AMCG00001145
TU161636 other downstream 115032 15560345 ~ 15909126 (-) False AMCG00001127
TU161519 other downstream 590689 15364067 ~ 15433469 (-) True AMCG00001118
TU161398 other downstream 843836 15179241 ~ 15180322 (-) True G128741
TU161258 other downstream 1425588 14592699 ~ 14598570 (-) True G128628
TU160833 other downstream 2664388 13356983 ~ 13359770 (-) True AMCG00001061
TU161965 other upstream 1145290 17172870 ~ 17173677 (-) False AMCG00001156
TU162350 other upstream 2497312 18524892 ~ 18525543 (-) False AMCG00001193
TU162357 other upstream 2528250 18555830 ~ 18558217 (-) False AMCG00001196
TU162458 other upstream 2861185 18888765 ~ 18889757 (-) True G129566
TU162897 other upstream 5220081 21247661 ~ 21270383 (-) True AMCG00001251

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00075194 True 4924 lncRNA 0.36 2 NC_007120.7 45878659 ~ 45884134 (+)
grasscarp (Ctenopharyngodon idella) TU66574 True 2238 lncRNA 0.39 1 CI01000009 14469534 ~ 14471771 (+)
eurasian perch (Perca fluviatilis) TU165084 False 1501 lncRNA 0.43 1 NC_053123.1 8315193 ~ 8316693 (+)
tiger barb (Puntius tetrazona) TU107520 True 997 lncRNA 0.38 2 NC_056707.1 23005849 ~ 23058087 (+)
mexican tetra (Astyanax mexicanus) TU107520 True 212 lncRNA 0.35 2 NC_035905.1 11803065 ~ 11805194 (-)