RNA id: TU161795


Basic Information

Item Value
RNA id TU161795
length 2711
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G129033
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 16353435 ~ 16378315 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTGCGAGCAGCCTcgtttcttctttctttttctcctcatgtctgtcgaAAGGCATCTGGAGGAGCTCGTCTTCACAGCAGATGAAGCTCACTGTACATCCCATCCGGGCAGCTGGCGAGCCCAGTCCCGGTGCTGACCCATTCAACTGCACCCCGCCGGCGAGCGCTCCGGTCCTCCCGGCTCCGGCCACAGAAACTTCCCTAACATTCACACGTCTCTCGCTTTAGAGGCACAGGTCTACAGCAAATCTCTCCATATCAACAGTACAGAGACATCTTTGAGAAGATGATACAGTACAGATTTGACAGCTACAGAAAAACCAGATCCTGAAGATTAGACCAAACAGCCTGGTTGTATGAGTACATGAAACAGTACTGGTCAGATACAGGTACAATTATAAAACTAATgccattcttctttttttatcacGCTGATTACACTAATAAAGCAGATGAAATCCAAATgagaatgaaagagaaagaaaaatgatatGGAAATTATGCTGTCTTGCCGCCATCTAACCTTAAACCCCACGGAAACAAAGTTGTGTGATAATGTGCTGTAATGTTGAAGCAATAGATGTCCTCTCGTGTATTTTTGcttgagaaattaaattaattctctTTCAGAATGAATTGCTTATCCTGATCCTTCCTGTTTTATCGTATTGTGTTACAGGCCAGTTCTGTTTTCTCAAAAAATAGCATTACAATTGTAGCTGTTATAACATAGCACTATTTGGGGTCCTCAGTAGGGTTAAGATTGCACAGTTTCCTTCTTGTTGTGTCACTTAACTCTACCCTAACTCTATAGCCAATAGACATTGTGTAAACTTATATGGCATATGCCATCAGCCTGTTCTTTATACTCAAAGAATGACATTGAGTTCATTAGACCATAGCTGGTGTTATTAACTGCTTTATCTCCCACAATATGTAAGTAATCTCTTCCCTTATTGCActtattaaattgattaaaaaaaaataaagatatgcaCAGTTtcaattcataattaaatatggATTCACTTTTTTCCCAACATTTGAGTACACAATGAAAAGTAGTCCCTTTCAGTGTAATCAgtcaacaaatattttttcatcatagttcaaatcaatcaaatacaTTATCACAATATTCAGACACCTGCTCCTGAAACATtgataaatcattaaaatgttaaatactgATGAAATCAGAATGAATGCCAAATATCTAAACTAATAGGAAGTACTATAAtaagataaattaaaatatgagattatatacaattatacaagaTATTTACCAACCCATTATGAACTAaggtatatttaatttgtgctaAGAAACAGTTACAATTTTTTCATCTCATCTGGGAGTAATTTTTGGAACACTTTCTTGTTTGCTATGAAAATGATACAGAACACACATACTGTATTGATTAGaatataaaacactgatttacacagcaatatatacaaatccagcttttgaaatgttacaTAGAAAAGCAAATTCCAAATTTAAATGATGTGAACAGTTTATAAACATaatgatgaaagaaaaatgGTGTCCCAATGTcctaaatgaaaacacactcaAATTGTTGCATGGCCAATGAGCCAGTCGGGAGCAGAAGCACGTCCCACATGTTGGGGTCTACAGCGTTGTGGACGTATTCCCTGAAGTAGAATAGTGAGACGACCCCCTTCTGTAGGCCGCCATGGCCTTCTTGCTGATGAAGCCGTGTTTCAAGAGAGCTTTGAGGAAAGAATTGCGAAACTTCTGCCCGATGAAGGCATACATGAGGGGGTTGATGCAGCAGTGCATGAAGGCCAGGATCTGGGTGGTGTCCAAAGCAGTGTCGACCTGATTCCTCACCTCACAGGTCTCCTCGATGACTTTGCTCCGCATCAGGGTGTCCACAAAGACAGCCAGGTTGTTGGGGAACCAGCAGAACACGAAGGCCAGCACCACAGCGAAGATCACTTTCATTGCCCTGTGCTTCTGCCCACTTCGCGTCTGACAGAGGGTCTTCACCGTGAAGCCGTAGCAAAAGATCATGATGGCCAGAGGGATGAAGAACCCCACTATGTGGCGCATGAAGCGAATGGTCACCCTCCATCTATCCACACTTTCTCCCTCTAGGTGGTCATGGCATATAAACTTCTTATGGGAACTGGACCAGAATGAAGTGCGGTTGATGAGGATAGGCAAGGAGAGCAGGACCGCCACCACCCACACTCCTGCGCACACAACATGCACCAAGTGGCGTTTCTGGGTGATTGCGTGTGTGGCATGCACGATAGCAAGGTAGCGGTCAACACTGATGCACGCCAGCAGCAGAATGCCACTGTAGAAGTTTGCCTCCTGCATAACAGACACTAACTTACACATGAAGACCCCAAATATCCACTGGGTGTTAACGTAGACTGCCCAGAAGGGTAGAGTCAAGGCAAACAGGAGATCTGCAACCGCCAAGTTCAAGAGGTAAACATCAGTGGAAGATCTTTTGTTATCCATGCAGAGAATCACAAAAATCACCAGGATGTTTCCTAGCAAGCCGAGAAGGACCACCAAGGTGTAGATGACCACCACAAGCCTGCTGTCCAGGCCGATATCGGAAGAGGTacatggagagaaagagagatctATTCCATTTGTGTAGTTATCGTCTGTATAATTGGAAAAGTCAAAGTCAAATTCGGATAAACTAAACTGAAAGCTCA

Function

GO: NA

KEGG:

id description
ko04672 Intestinal immune network for IgA production

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161707 lncRNA downstream 325855 16024158 ~ 16027580 (-) True G128976
TU161602 lncRNA downstream 794086 15519616 ~ 15559349 (-) True AMCG00001127
TU161603 lncRNA downstream 794086 15554286 ~ 15559349 (-) False AMCG00001127
TU161589 lncRNA downstream 889646 15462717 ~ 15463789 (-) True G128890
TU161524 lncRNA downstream 940243 15409210 ~ 15413192 (-) False AMCG00001119
TU161811 lncRNA upstream 141866 16520181 ~ 16574599 (-) False G129042
TU161809 lncRNA upstream 190728 16569043 ~ 16574599 (-) True G129042
TU161837 lncRNA upstream 497996 16876311 ~ 16880485 (-) True G129065
TU161912 lncRNA upstream 545396 16923711 ~ 16995408 (-) False G129125
TU161915 lncRNA upstream 562352 16940667 ~ 16941282 (-) True G129126
AMCG00001144 mRNA downstream 31699 16311684 ~ 16321736 (-) True AMCG00001144
AMCG00001143 mRNA downstream 47752 16297028 ~ 16305683 (-) True AMCG00001143
AMCG00001137 mRNA downstream 77961 16260396 ~ 16275474 (-) True AMCG00001137
AMCG00001136 mRNA downstream 250687 16027645 ~ 16102748 (-) True AMCG00001136
AMCG00001131 mRNA downstream 426665 15922391 ~ 15926770 (-) True AMCG00001131
AMCG00001145 mRNA upstream 16720 16395035 ~ 16399430 (-) True AMCG00001145
AMCG00001150 mRNA upstream 478839 16857154 ~ 16872727 (-) True AMCG00001150
AMCG00001151 mRNA upstream 516528 16894843 ~ 16934576 (-) True AMCG00001151
AMCG00001155 mRNA upstream 620302 16998617 ~ 17000562 (-) True AMCG00001155
AMCG00001156 mRNA upstream 748044 17126359 ~ 17187630 (-) True AMCG00001156
TU161636 other downstream 444309 15560345 ~ 15909126 (-) False AMCG00001127
TU161519 other downstream 919966 15364067 ~ 15433469 (-) True AMCG00001118
TU161398 other downstream 1173113 15179241 ~ 15180322 (-) True G128741
TU161258 other downstream 1754865 14592699 ~ 14598570 (-) True G128628
TU160833 other downstream 2993665 13356983 ~ 13359770 (-) True AMCG00001061
TU161965 other upstream 794555 17172870 ~ 17173677 (-) False AMCG00001156
TU162350 other upstream 2146577 18524892 ~ 18525543 (-) False AMCG00001193
TU162357 other upstream 2177515 18555830 ~ 18558217 (-) False AMCG00001196
TU162458 other upstream 2510450 18888765 ~ 18889757 (-) True G129566
TU162897 other upstream 4869346 21247661 ~ 21270383 (-) True AMCG00001251

Expression Profile