RNA id: TU162040


Basic Information

Item Value
RNA id TU162040
length 2842
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G129221
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 17487392 ~ 17550791 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

taaaagaaagggggcatatatttatttgtattgcttcatGTTTTTAACAGAGCACAGTAGTTGTTGTTCCGATATAGTGTGCAACAAGTCTGTCAAAGTACAAAGATATGTaagcattcaaattcaaaccCTAATAGAAGCCTTCTACgttaaataaatgattggaAACCTTGAAATGTGTATGAATCTACAAATACCAGCAGTTGTTTTTTATAGCCACTTTATTGCATAGCTTTTCTGTGTAACCTCAGATTCATTACGGTCTtggaaaatattcaaaaaacaGTTCTCCAAGATTGtccaaattcaaaataataaagtcaCATAATATAAGGAGCATTTAAACATGAAGTCTGAATGACCATCAGACCACCAACTCAACAGAAGTAAAGGCTGTTAACAGTTCTAATGCGTTTCTTGCAATGTAGTGCCTTTTTCCCCAATGTCCAAAGTGTAGCCTATAGAAATATTATAATAGAGTCCAATTTTGAGGCCGTACTACGAATTTCGAGGCAGGGCAGAGACATATGGTTTACAATGACTgggcataaaaaataaaaagagttcTAGGCCTAGGAGATTGTCGACTGTTAGGATAATGCATGGGCCCTTTCACCCTAAATATTTTACTACGGTGTCACTACCCTGGTATGTAGCATTAGAGTTTCCAGAACCACTTTACCTCGTCTTGAGAAACCTTGTCTTGAGTCTGGAGTCTCACATGACTGGTAAGCTGAAACAGCACAGTGATAGTCAGGCTGTAAACGGGAGTTTGAGATAGGACATCTTATCACATCAGAACAGAACAGCAGGGATGTCTTTTATCTATCCACTGCTGGGTTTGTTTTATGAAACACAGGCATACATCAGCAATCATGGTTGAATCCtcagaaaacaatcaagataaCCTCCAAAAtattcaaagagaaaaaaaaaaagatctaccAAAAAAAGCTTACAAATCCTTATCtgcatcagaaaaaaaaaaaaaaatccagttataaatgtatttgttttggatcTTATTGCCCAAATTCGTTCAGTTCTTTCAgggtttctatttttatagCTGCAGTGAAACAAAGTTGCAAACcagtaaaattatttatatatatatatatattttattacaatatgcCTTGTTAAATACCCTATTCTAAGCTCGAGGGGCCATAGCTTATGGACCAAGGGAGACTGGAGTTAATATTTGAGTAATGTAACTGTCTTTTTTGCAATAAGATCCCCTTATATTTGGCAGCTAAACATTCCCACTGAGATGCGCTCTTTAGCTGCTTGCAAGGCCAGATTATTAGGAAGGAAACCAGAGATGATTTCAAATCTAGTGTTAGAATCACTACTAAGCAAGATTTGTAGTTAATGTGTTATCAATTTAATAACTTTCTCTAGAGAATTGCATGAATCTGGAACCAATTAATTTGACATGACAAAGGATTTTAATCATCTCAACATGAATTCAGCTAATGAATGCACACACGTCTGCAATTACAATTATGTTCGCAGGCCTGAATCTGAATTTCATAATAAGGAAACGTAATTAACTTTACTTTAACATTTAAGAGGAAATTGTTCTCAGGTAAGGGCACTTCATCTAAAATCTTACCCTGCTGCTTGAAAAACACTTATGAGAATGTGATGATCCACAATGCACTGCTGCTCGAACAGCATCcattaaataaggaaataaaaaataaccaaaaagcaaattctatattttttgtattttaaatttcacCAAAGATCATGTTAATTATGTCAGCTAGTGTgctctaaattaaatatttcaaattaagccAGCACAAAgtctattaaaatatgtaactacaatatttcagaaaaatacaaGTATTCTGATGATTTTCTCTCAAAACCATCAGaattttttctcatttctatttactaaacatatatattatactatatcatcatcatcatcatcatcagccagGTATTTCCAGTTGTTTCGAACTACAGAGTCtctttccaggtcacaccagcaaatccTATTTCACCTTCCCCTCTGTTATGTGTTCGTCTTTCTagatcttttttcatctcttgggatcccttcttttgtccatctttggtctgatcttcttgcagtgtgtccggcccattgccattttaacattttcactttcaatgaTGTAACATAGGTTTGTTTATTCTCaaattcatttgtttatttgtctctGCTCATTATTCCAAGCATCCATCTTTcaatgcttctttgtgttgtccgCAGTCTCTATGTAATTTTTGCGATTAGTGGCCAGGTCTCACACTCATTAATGAGCACTGATTGTATGCATTGATTAAATACTTTCCTCTTCAGGTAAATAGGTAGATTTGGTTTCAGTGGCAGCTGTTTCGTCCCAATGTACTCCTCCGATTTTcactcttttgatttcttccaaaGGATTTGCATCTGCTTGAATTACTTCTTCAATattttgatctacttcaattttcttatttttatcaaaattaatttggttttattcagTTCATTCAAGTCCAGGTGGAGCCCCCCCCATGGCAGTACACAGTGGTGGTCATCTCCTTTCTGGTGAGCAGCGCCGCAATCTCTTCCTGGGAGGGCACAAACTCCCTCGTCTTGGTCTTCTTCAGGGACTCTCCGATGAAGTGGGCATACTTCTCAATCTCCGTCCCCGAGAACTGCTCCTTAATCCTGTAGGAGGGAAACACAGCAAGGGCAAGGATGAAGTCAGGAGATGGAGAGCTCGAGGCAATGTGCACAGACAGCAAAGACAGGACGTCATGGCTTGAATCTGAAGACTGGGCTATATCAGCCTGTCAGTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161853 lncRNA upstream 340323 17144190 ~ 17147069 (+) True G129080
TU161844 lncRNA upstream 595031 16889638 ~ 16892361 (+) True G129071
TU161684 lncRNA upstream 1425213 16022258 ~ 16062179 (+) True G128958
TU161649 lncRNA upstream 1562582 15923032 ~ 15924810 (+) True G128941
TU161647 lncRNA upstream 1565353 15921674 ~ 15922039 (+) True G128939
TU162082 lncRNA downstream 140716 17691507 ~ 17692526 (+) True G129255
TU162181 lncRNA downstream 421218 17972009 ~ 17976936 (+) True G129343
TU162309 lncRNA downstream 1004360 18555151 ~ 18557104 (+) True G129442
TU162310 lncRNA downstream 1004360 18555151 ~ 18557104 (+) False G129442
TU162442 lncRNA downstream 1246059 18796850 ~ 18802040 (+) True G129552
AMCG00001162 mRNA upstream 65526 17421069 ~ 17421866 (+) True AMCG00001162
AMCG00001161 mRNA upstream 89373 17384589 ~ 17398019 (+) True AMCG00001161
AMCG00001159 mRNA upstream 178806 17297142 ~ 17308586 (+) True AMCG00001159
AMCG00001158 mRNA upstream 190714 17270011 ~ 17296678 (+) True AMCG00001158
AMCG00001154 mRNA upstream 344405 17125328 ~ 17142987 (+) True AMCG00001154
AMCG00001169 mRNA downstream 173457 17724248 ~ 17725586 (+) True AMCG00001169
AMCG00001170 mRNA downstream 196259 17747050 ~ 17755669 (+) True AMCG00001170
AMCG00001168 mRNA downstream 222154 17772945 ~ 17782621 (+) True AMCG00001168
AMCG00001175 mRNA downstream 242602 17793393 ~ 17804682 (+) True AMCG00001175
AMCG00001174 mRNA downstream 307561 17858352 ~ 17866887 (+) True AMCG00001174
TU161504 other upstream 2066512 15409112 ~ 15420880 (+) False G128823
TU161370 other upstream 2313245 15169911 ~ 15174147 (+) True AMCG00001098
TU160309 other upstream 5475967 11999664 ~ 12011425 (+) True AMCG00001002
TU159756 other upstream 7333205 10147857 ~ 10154187 (+) False AMCG00000949
TU159397 other upstream 8867197 8617199 ~ 8620195 (+) True G127134
TU162207 other downstream 472269 18023060 ~ 18044251 (+) True G129365
TU162326 other downstream 995102 18545893 ~ 18547915 (+) True G129453
TU162312 other downstream 1004360 18555151 ~ 18558174 (+) False G129442
TU162456 other downstream 1337600 18888391 ~ 18889724 (+) False AMCG00001203
TU162506 other downstream 1492513 19043304 ~ 19142145 (+) True G129594

Expression Profile