RNA id: TU162101


Basic Information

Item Value
RNA id TU162101
length 542
lncRNA type read_through
GC content 0.40
exon number 3
gene id G129273
representative False

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 17710897 ~ 17761905 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTCATCTTGCGTCTGGGACACAAATTAAATGGAGTTCTGTGTGACGGAGAGTCCAGCGAGGTCGTGGCATCAACCGTCGTTAACTGCCTGAAAATTGATGAAGGCACCATCACCATTGTGAGAGAAGGCTGTGTCCCAGCCGTCAGAGTCAGGCAGATATTTGAGAGGGTGAAGAGCAGCATGGCATGAGCACACGATCCCACCTCAGTGAGTGTCTGAAACCCACAGGTCTACTGGCAGGACTGGGATGAACCGGACTGAGTAGCGTCATAGCTCTGCAATGAAGATTCCACTCAAACAATGaagaaacacatacaaatgttaacactttacaatagtgAAGTGATGAGTGATTCACTGTATATTTGGGTagaatattcattattattgatctTACACCAGGTGtctaaaatctgaaataaatgtattagatattgtgttagttatttatttactttgaatgTGTAGTATAGGAAATTGTCAggttttaatattgtgtttctctctgctgttgaatttatttacatgacaaataaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162072 lncRNA downstream 191260 17514540 ~ 17519637 (-) False AMCG00001165
TU162020 lncRNA downstream 379216 17331460 ~ 17331681 (-) True G129213
TU161912 lncRNA downstream 715489 16923711 ~ 16995408 (-) False G129125
TU162114 lncRNA upstream 17011 17778916 ~ 17782649 (-) True G129286
TU162197 lncRNA upstream 210104 17972009 ~ 17976917 (-) True G129358
TU162213 lncRNA upstream 295235 18057140 ~ 18057666 (-) True G129370
TU162214 lncRNA upstream 295297 18057202 ~ 18057666 (-) False G129370
TU162247 lncRNA upstream 478551 18240456 ~ 18265272 (-) True G129394
AMCG00001166 mRNA downstream 117036 17544583 ~ 17593861 (-) True AMCG00001166
AMCG00001163 mRNA downstream 173672 17523452 ~ 17537225 (-) True AMCG00001163
AMCG00001165 mRNA downstream 189627 17514386 ~ 17521270 (-) True AMCG00001165
AMCG00001167 mRNA downstream 214762 17487397 ~ 17496135 (-) True AMCG00001167
AMCG00001164 mRNA downstream 223907 17440716 ~ 17486990 (-) True AMCG00001164
AMCG00001176 mRNA upstream 44328 17806233 ~ 17856789 (-) True AMCG00001176
AMCG00001179 mRNA upstream 215932 17977837 ~ 17989616 (-) True AMCG00001179
AMCG00001185 mRNA upstream 411978 18173883 ~ 18236780 (-) True AMCG00001185
AMCG00001187 mRNA upstream 538928 18300833 ~ 18318933 (-) True AMCG00001187
AMCG00001194 mRNA upstream 745644 18507549 ~ 18517536 (-) True AMCG00001194
TU161965 other downstream 537220 17172870 ~ 17173677 (-) False AMCG00001156
TU161636 other downstream 1801771 15560345 ~ 15909126 (-) False AMCG00001127
TU161519 other downstream 2277428 15364067 ~ 15433469 (-) True AMCG00001118
TU161398 other downstream 2530575 15179241 ~ 15180322 (-) True G128741
TU161258 other downstream 3112327 14592699 ~ 14598570 (-) True G128628
TU162350 other upstream 762987 18524892 ~ 18525543 (-) False AMCG00001193
TU162357 other upstream 793925 18555830 ~ 18558217 (-) False AMCG00001196
TU162458 other upstream 1126860 18888765 ~ 18889757 (-) True G129566
TU162897 other upstream 3485756 21247661 ~ 21270383 (-) True AMCG00001251
TU162985 other upstream 3848402 21610307 ~ 21648508 (-) False AMCG00001264

Expression Profile