RNA id: TU162181


Basic Information

Item Value
RNA id TU162181
length 4928
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G129343
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 17972009 ~ 17976936 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

acagGTTCTTTTTTTCATAGATAAAAATAGGTTTTCTAGACTTGAAGTAGTCAGAGTGATTCATATTGGGCAGTAGAACATATTTCTGCCAGCAGTTTGAGCATATCTTTTATCTGTGTGCATTTGGAATCaactgttttaagaaaaaagcagagaaaaaaagaaaaaaaaaccttgagaAAGTCTAGCGGATTGTTATGGATCTTTGTTACTTAGCCTGTGTGTGCCAACACAAGGGATACCGTCCCTTTGGAagagattttaatatttcatctCTTTGTAGCTCACAGTCTTTTTACATACTCTTTGCTTAACGGTTATCAACTAGCTTTTTGCATACTatactgtcatttttttttctcaactgaGCAGTAGCGAGCAGCATTCTGATGTTTTTTTGAGATGGCTTCCGCTTCCCCGAATGGATCatgataagaagaaaaaaaaaaaaaaaaacagcaacaaaaaagaTGGTACCTGtcctaatttaaaaacactgtccaggaaaaaaaaaaaaaaaagtttggaaGCAGTTTCCGAATTGGCTGTTtgaagagggagaaaaaagacagagaaaaaaagaaaagaaaaatgcacacaaattgATGTCTTAATGCTGTGCTCCTTTAATGTAACGCAGCCATAGTTAACAGAATGTGCTCCACATTCTCTGCCTTATATTGAGCACTATTCAACAGCACTATAGAGGAACAATGTGACACAGGGCCGCGATGGTTGATAGATTTGTACTATAAAGGTTGGCTTTATAGTGGGAGGGTGAGGGGGGGGGCGCTGAACAAGCCGGGGAACGCTGCTATAGAAGGGGCAGTGTCTCTCGCCCTTCCCTCTAATCCAATCCACACTAAACGACACAACAACATTTGGCTTTAACCTCTCGATCAGGGAGTTCTCTGTCATGGCCTAACAACTgtgaatgtaaaatatgcagCCTTTTTCCCATCCGTGTCCGGCACTAGAGTTGGTCAGCgggattattcttttttttttccttgtctttgtttattttgtttttatttttcatcccaGGCAGTTATTTGCTGGATGTGCAGGTACGGATGGCCCTGTTTTTTGTGCTTTATATAATCACCATGGAAACATGCTGCCTTAACTGTTACTGATTGGAGAATCTTTCTCTCTCGTCATGAGCTATCGGTTTAGCTATATCTTCCAGACTTTTTAAGGTTAGCGCAAATACAcacaggtttgtgtgtgtatatatatagagagagaaatgtttataaatatattttttttcctattttgtgatgagaagaaaaaactaaaaactttttttttaaactatattttaaatttgatttcaatatgaaattgaagggaagtgttttatttttgaaaacatgaatattaataatataaatgatgGATAATGATGCGatcaatacaaaaagaaaacattaaagtaaataaataaataaataaataaaataaagagatcATTTTCCCAGGACATGGAACAGTGCGCATTTCAATATTGTGATCTACCTCAGGTGTAAGGGTACCTCagtcttttctttaatttccctttttcGAGATTTTGTATGCCTTGTAAAACTGATAGTTttgagcattttttttatttttttaataaaagaaaagaacaagaaaaaaaaatagttgaaACTTTTAAGTCCAAGCAACCTGAACGGGAGGAAAGAGTCTTGAGCATTCAAACTGTATTGTAATCAATGCTCTCCCATTGGCTGGACAACCTCtcaacctttcttttttttcttctttttttttcctttctttttttgataAAGACCTTGAATAACCATGCTCAACGTGAGAACGAAATTGAAGGGGTACATGCCCGTAATGTTTCTGAGTCGAAGGAGATAATGTGTACTGATTTCatgaacaaagaaacaacaacgtcaacaacaacaaacatgcTGTTGTACCAACAGACTGCAATGCCAGTTTCCTTTACTGCAAACAGtgttctgtgaaaaaaaaagacaaaatatatctAGCTAACAAAATATGATTGTAACCCAGCCTGTTGTTACCAACTAGCCCAGATAGGGTTCTGTTCCAGGGATGGTGTAAAGctgaaatcaaatacatttaaacagagaCAGGACCTTAACATGTATATAACACTAGCCTTTACTATAGTACATTATAATAGACTAGTGTTTCGGCTGTTACTGTGTATTGGAGGAAAACCTGTATATCTGTAAACATAGATGTACAATAGAGGACTAATGCAGACTCAGCTGTTTTGCCATTAACCCAACAATCCCTCCACCCCCTACACACATATTGATACATATACACACTGAGACTTAAAGGCAGTGAAGTTTTAGACAACTTTTTCgggtaatttgtttttaatggattaatagataaataaaacctTCCGAAGGAGCCTTTTAAAGGCAGTTTTCTGCAGTCTGCAACCATGTTTTGTGTGATCTGTGAAGCTTGCTTTCAAACTGAACTAACTTTGCACCTCTCTTCTTAAATAGATGTCCACTGACCTGCATGCTTTTCCTGTAattctcaaataaatgtatcaaaatgatttaatcaAGTCAATGCAAAtgacacaaactgaaaaaaaacctGCTTCCCACATGCTCAAGTGTGTTGTTGCACACAGCTGTGAGGAGATAGTATTCAAATACGCAGTATTTTCAAATTGCGCATCTCATTCAAGTCATATCCCGTGAATTCCAGACTTCTAAATTCAAagtttctgattttgtttttatttctttaaaggaaaaaaagaggtggaggtggaggtggcaAACTATTGACATACTGGGAATCAGAGTGATGCAGCTTTTAGATCCTTTAACAAAAGtcacattgtattttgtgttcttCACAGACCACATTGACTATGCATGTTTTTCCACTATATAAATCAATAGTCAATCAACCAAACACTTAAAACACTCGCTTGCGAACACACAAGCGTGCCCTGCCGTGGTGTATAACCGGGCACTTGAGGTGACACAGAGACAGTCAAGAAGATACCATCATCCGATACAAGTTAAGACTGAGAATATGGGAACCCCATCTATAGAACACAGAATCGCTTTAAAACAAACGGATGGGCTCTCAATCGAGAAACTGAGAAAGTGTGTGAGTTCCTGCAGTTTTAAAGTATATGCTAGGGCATCTGAATTCCTCTGCAGAACAATAATGTGGTGTCTGTTCCTTCACGtgcagatgaaaagaaaatgcaacctTTTCAGAGCATCACTTCCACCTCGAGTCCATAggtgtaattttattttctggcaAGTATGTCGTTGTATGTCCAAAGACAGTTCAAGACATGCTGTGATTAGGTTTTATGAATTGATAATCTACTAACACCCAGGCAAGTGTGGTAGTCTTAATGTCCTCAGACTCGtccatttgcatttctttggtACTAAAGTTTTAGAAGAAgtttatgctgtttttttactTGAAAAAAACTAACTGAGGATTGTAACTTTTTTTAGTATGTCAGAAATGAAGATGCTTTATTTTGAGAGCAGTGAAGCACTCCCACCAGGGCTGGGTAATTGTTTTGAGCAGAATGGCTTGGGAGGTATATTTTTCATTGGGACATATTTTTCGTATGTTCTGTGTTGTAATAAGGCTCTGAACACTAGAATTATACGTAATTGATTGGAATTCCTAGTGTGTATTTTGGAGATTTGGAGAAGCAGACCTGATTTATCATATTTGGAGAAATATCAGGAGTTCTCCGGAGTGTAAAATGTTCCCAGTACCGCCCAGGGATGGGATGTTCATCTCTTAACTGCTTTGAAATTATGGGATTATGGGAAATTGTGATGGGCTCTTTCAAAGTTCTCATTATAAGGAGGAGATTCTCTTTGAGCCGTTTGATTCTGGTTAGCACAGAAATCAGTGATCCTTCTTTTGGAGAGATTTGGATTTTACGGTTAAAGGCGTCATGCATGTCGTCGTTGAAGGCATGGAAAATACTTCACATTAGGGAATGCAATTGGGAGACGTGTTGGAGGTGGAGTGGGGAGCAACACGAGAGCAAATGTGTGTCTTTCCTGTGTAGAGTTTCTGAGGCTTCAATCATATCATGAACTCAATCACAGAAGGAGCAGAAAACTGTCTTCAAAAGGCAAGATAGATTGGTTACGTGGAGGTTCTTAGCAGGGAACATGAGAATATTACATGACTACTTAGAACTTCATTCTTTAATAGAttccttcctttccttttttcaatttcttttgtttttttaaagacattgcATGGGAGAAATGTCATAGGGTGTAaacatttattgcatttcacATACATGAGTAATAGCTTAGGCGGATTCATTCCTAAACTGAAATTTCACCACTGGAGGTACTTTCGTTCTTTTCACAATCTGAGAGGAAAAGATCTCCTGCCACCAGTTACCATTCGACACCTGTGATAAACGTACAAAGGCTTTTTCATGCTGGTTTAGGAGGTGATTCATTCCTTATGGTAACAGCCAAGCTGTGCTTTTGAATTGTGGGTGAACTGTACTGCCGACCAACCTGGATATGAGCAATAAAGAAAGTCTTCAAGTGTTGAATCTATTGTCATGTGAACTTCTCAGGGTtgattttgtgtatgttttgtaacTGTTGTCGTATTCTGTGGCCTTTTTTGAAGCCTGCCAAAtctgcctttttttgttttcttttaatcaaattattttggtgtcatgaggaaaataaattgacagaaataaaaattacTTGGGGGCAACAGAATTATAACAATAGCCATTTACAAACCTAACCTAAATTGACCAAGGAATGATAGAAAGCTACACTACATATGAAATGTCCACTGCATAGTACAGcaaatgttgcattttcaaGAGCTGTTCTACAagtgtacattaaatatatacattcatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162082 lncRNA upstream 279483 17691507 ~ 17692526 (+) True G129255
TU162040 lncRNA upstream 421218 17487392 ~ 17550791 (+) True G129221
TU161853 lncRNA upstream 824940 17144190 ~ 17147069 (+) True G129080
TU161844 lncRNA upstream 1079648 16889638 ~ 16892361 (+) True G129071
TU161684 lncRNA upstream 1909830 16022258 ~ 16062179 (+) True G128958
TU162309 lncRNA downstream 578215 18555151 ~ 18557104 (+) True G129442
TU162310 lncRNA downstream 578215 18555151 ~ 18557104 (+) False G129442
TU162442 lncRNA downstream 819914 18796850 ~ 18802040 (+) True G129552
TU162443 lncRNA downstream 819914 18796850 ~ 18802040 (+) False G129552
TU162512 lncRNA downstream 1111212 19088148 ~ 19090238 (+) True G129597
AMCG00001177 mRNA upstream 776 17951597 ~ 17971233 (+) True AMCG00001177
AMCG00001180 mRNA upstream 69503 17901050 ~ 17902506 (+) True AMCG00001180
AMCG00001178 mRNA upstream 74606 17890483 ~ 17897403 (+) True AMCG00001178
AMCG00001173 mRNA upstream 91620 17872517 ~ 17880389 (+) True AMCG00001173
AMCG00001174 mRNA upstream 105122 17858352 ~ 17866887 (+) True AMCG00001174
AMCG00001181 mRNA downstream 12940 17989876 ~ 18011937 (+) True AMCG00001181
AMCG00001183 mRNA downstream 35522 18012458 ~ 18024201 (+) True AMCG00001183
AMCG00001182 mRNA downstream 65426 18042362 ~ 18044599 (+) True AMCG00001182
AMCG00001184 mRNA downstream 260995 18237931 ~ 18252467 (+) True AMCG00001184
AMCG00001186 mRNA downstream 290140 18267076 ~ 18300206 (+) True AMCG00001186
TU161504 other upstream 2551129 15409112 ~ 15420880 (+) False G128823
TU161370 other upstream 2797862 15169911 ~ 15174147 (+) True AMCG00001098
TU160309 other upstream 5960584 11999664 ~ 12011425 (+) True AMCG00001002
TU159756 other upstream 7817822 10147857 ~ 10154187 (+) False AMCG00000949
TU159397 other upstream 9351814 8617199 ~ 8620195 (+) True G127134
TU162207 other downstream 46124 18023060 ~ 18044251 (+) True G129365
TU162326 other downstream 568957 18545893 ~ 18547915 (+) True G129453
TU162312 other downstream 578215 18555151 ~ 18558174 (+) False G129442
TU162456 other downstream 911455 18888391 ~ 18889724 (+) False AMCG00001203
TU162506 other downstream 1066368 19043304 ~ 19142145 (+) True G129594

Expression Profile