RNA id: TU162214


Basic Information

Item Value
RNA id TU162214
length 465
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G129370
representative False

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 18057140 ~ 18057666 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NNNctgttttgtttgacaattttagaaataaaatctgtcaacgcagAGAAATATCTTAtaattcctgtttaactgtttagtctgaaattgacacacgttaatagacactagattataggtggccctgcctatccttaatcattgaataataatcagttaagggaaattgtggtaacaagaaatgataggatctttctcggcacccaaacgtaaatgagactgatatatataacgagaagttatttggcataaatactaacctgcattagttatttaatgtccgacaaacaatactaatgagagactcacctttttcttactaactggtattgtagtcaatgtgtttgtaattttgtgtaacgttttgtaTGTTATATGTGATTCCATGGGTTGatttttgatttggtcacagaagtgatttgtctttgatcttgagtgaattttaattcgtttttccctttttgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162197 lncRNA downstream 80285 17972009 ~ 17976917 (-) True G129358
TU162114 lncRNA downstream 274553 17778916 ~ 17782649 (-) True G129286
TU162101 lncRNA downstream 295297 17710897 ~ 17761905 (-) False G129273
TU162100 lncRNA downstream 345149 17710897 ~ 17712053 (-) True G129273
TU162072 lncRNA downstream 537565 17514540 ~ 17519637 (-) False AMCG00001165
TU162247 lncRNA upstream 182790 18240456 ~ 18265272 (-) True G129394
TU162302 lncRNA upstream 352440 18410106 ~ 18412750 (-) True G129437
TU162303 lncRNA upstream 355188 18412854 ~ 18413433 (-) True G129438
TU162305 lncRNA upstream 355819 18413485 ~ 18415110 (-) True G129440
TU162338 lncRNA upstream 419951 18477617 ~ 18480956 (-) True G129465
AMCG00001179 mRNA downstream 67586 17977837 ~ 17989616 (-) True AMCG00001179
AMCG00001176 mRNA downstream 200413 17806233 ~ 17856789 (-) True AMCG00001176
AMCG00001171 mRNA downstream 288750 17757078 ~ 17768452 (-) True AMCG00001171
AMCG00001172 mRNA downstream 327401 17728998 ~ 17729801 (-) True AMCG00001172
AMCG00001166 mRNA downstream 463341 17544583 ~ 17593861 (-) True AMCG00001166
AMCG00001185 mRNA upstream 116217 18173883 ~ 18236780 (-) True AMCG00001185
AMCG00001187 mRNA upstream 243167 18300833 ~ 18318933 (-) True AMCG00001187
AMCG00001194 mRNA upstream 449883 18507549 ~ 18517536 (-) True AMCG00001194
AMCG00001193 mRNA upstream 467067 18524733 ~ 18532689 (-) True AMCG00001193
AMCG00001192 mRNA upstream 481329 18538995 ~ 18547799 (-) True AMCG00001192
TU161965 other downstream 883525 17172870 ~ 17173677 (-) False AMCG00001156
TU161636 other downstream 2148076 15560345 ~ 15909126 (-) False AMCG00001127
TU161519 other downstream 2623733 15364067 ~ 15433469 (-) True AMCG00001118
TU161398 other downstream 2876880 15179241 ~ 15180322 (-) True G128741
TU161258 other downstream 3458632 14592699 ~ 14598570 (-) True G128628
TU162350 other upstream 467226 18524892 ~ 18525543 (-) False AMCG00001193
TU162357 other upstream 498164 18555830 ~ 18558217 (-) False AMCG00001196
TU162458 other upstream 831099 18888765 ~ 18889757 (-) True G129566
TU162897 other upstream 3189995 21247661 ~ 21270383 (-) True AMCG00001251
TU162985 other upstream 3552641 21610307 ~ 21648508 (-) False AMCG00001264

Expression Profile