RNA id: TU162302


Basic Information

Item Value
RNA id TU162302
length 2529
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G129437
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 18410106 ~ 18412750 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGGTCATCTTTTGTTGTCAAATGCATGCATATGATCTAAAACTTTCCTTTCATGATGCATTTAGACTTGCCTTCATCATTTGCACTGAGCCAATAAAATGCACTGCACAGTTGGTCTGTGGTGAAGCAACCTTTATTGTAGGAACAAAGGATTCATATGGACCGATCTTCACAGAAGCAAAAAGCTGCAACCGTTTCTGACGTGTGAAAGAACAggattacacacattttcaacagtGTTAACAGGTAATCTAGAGAAACAATTTCAAGCACCTTCATGATTCATTTTTTGGAGGGAAAATTACAACACCAAGCAAACCTGATGTACACCCATAGCACCACATTTTAGTAATACGATATGTAAAAGGATGAAAGATAAtcttactgtatttattttgtgtaaaagtATACGTGAAGATGTACATTGCCAGATTAATGGAGGACAGGCAAATTTTATTGTATATGAACCCTAATGTATCCCATTTACGTCACATAACAGGGAATGGCTTCAGAAATTCAGAAGCCCTTGTCTCTGATTGCCATCTCTAAATATATTGGAAACAATATAAGGCTGCAGTTGGTAAGGCACTAGGGTTGACAAATTGGGATACCtctgattttaaaaatcaaactgaCCTGTCTCATGTCTTAAAAGAGATAGTTGTCCCTTAAAGGTATTGCACACTGCATTTCTAACATGAAGGATCGTAATTCCTTTAACTAATGAAGTATTTtgatatttgtaaaaataataagataaaaATACTCATCTTCAATTGTTATGTAAAACTGAATCTACATCTTTAATCAGAATCTACAACTGTATCAAATGCTTGGTTCTACTGTaacattttaacagaaaaaataaaatctttaagaGTACAACACTGAGCTGTTTTGCCAGAGGGAGGAAACACTGATGTAAATTCTGCATCACACTCAACAATCAACTCTTAAACTCAGAGCAGAAGAAATTATCCTTGTGGGGAAATAATTAcacagaaaagaagagaaaacaatgaCAACTTCTTTATATACTGTTATTTCATTATGTATGTCCCTTTCCCCCTAGTTCTTCTCAATCAAAATTTGAATTTCAAACttaatttggaaaatacatggaaacccatttctcCTTGATCTACAGTGTGGATTTCAGACAAAAGCAATAATGCATTCATGTCCTAATTACTCCACTCCCTGTCAGATACTATGTAAACTGCTGTTTGGAGACAGCACAGACTTCTGGTGTATCTTCCTTATAGGGAAGACACATTAGTTCACCGTAAGAATCTTGACAAAGTGGTCACAGAAATCTGAGTCTTGTTACTTTTCCATTCCTTCAAATCTCGTGTGTTTTCTTGTCCGTACCACTAGCAAGCTTACTGCAGTGGTTCTTTACTGCTCTTCTCAAACAAATGTCACCCCCTAGATTTCTTGGTCTCACTCCATGACTTAAGAAAAGTGGACAAGTAATATgaatttcacttttctttttctttacacGATGCACAAATAAACTGTAGCCTGCATTAAAAACCTTACgggaaaaaaaacccaaaaagtTGGatattacacaacacaaacaataaaccCTAAAGGATCTAATAAGCATATGCATCAGAAATCTTGATCGAGCGGTTGATCGTGTAGCCctcccacccccaaccccctacacccaccccaccccacagaCCCCATCTGCTCTACCAATCCTCTGTCACAAGTGAAATTCTCCTAGACACAGACTGATAAAAGACCCCCCTCATCAGAGCAGGGTAGTCGGCCGCCCTGAGGAGGTGACGATGGGCATAAGCATCGTCGTAGCTTTCACCCCGGCTGACCAAGTAGCGCAAGTTTGACTCATTGACATTGGTGCCGACCGCCAAGATGTAAACTTTGATACCGCTCCTCTCTGCTTCCTTGACTTTCTCCACTAAAAGGCTCTGGTTAATGCCCTGCGATCGCCCGTCCGAAAAGATCAACACCTTCTTGTTGATTCTCCTTCCGACCCTCTTGAACTCCTGGATCACGAAGTTGAGGGCCTCGGTTATGTCCGTGGCACCGTTGATGAAGCGAATTTCGTCGATCCTGCCTTCCATAGTGGTGTAGTTTTGTGAGAAGGGCACCTCTAGGATCTGCTGGTTCTTGCCACTGTACTGCCCTATGGCCACCTGCACGTTGACCCCGGGGGTCTTCTTGGCCGTGAGGAAGCGCTCTGCCAGGCGCTTCACAAACTTCTTCTTGATCTCGAAATTGTGCCTTCCCACGCTGTTGGAGCTGTCCATCATGAGCATGATCTCAGCATCAGCTTCGAAGGAAACTTGGACATGAATAGTCTGGGCACTGCTTTTCTGTAAAAAGAGAGGCATGAGAATGAGAAATTTAGTAGCTgctacagacaaacacagacacacacacacaccagaaagCCATGTCATTGCTCAGTGGTAGACGACTTTATTAGTCTTTAATATGTGGCTCTCCTCAACCGGGTTTTGAATCCGTTTCAATCATGTGACCATCAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162247 lncRNA downstream 144834 18240456 ~ 18265272 (-) True G129394
TU162213 lncRNA downstream 352440 18057140 ~ 18057666 (-) True G129370
TU162214 lncRNA downstream 352440 18057202 ~ 18057666 (-) False G129370
TU162197 lncRNA downstream 433189 17972009 ~ 17976917 (-) True G129358
TU162114 lncRNA downstream 627457 17778916 ~ 17782649 (-) True G129286
TU162303 lncRNA upstream 104 18412854 ~ 18413433 (-) True G129438
TU162305 lncRNA upstream 735 18413485 ~ 18415110 (-) True G129440
TU162338 lncRNA upstream 64867 18477617 ~ 18480956 (-) True G129465
TU162463 lncRNA upstream 477194 18889944 ~ 18890146 (-) True G129567
TU162475 lncRNA upstream 487761 18900511 ~ 18903646 (-) True G129571
AMCG00001187 mRNA downstream 91173 18300833 ~ 18318933 (-) True AMCG00001187
AMCG00001185 mRNA downstream 173326 18173883 ~ 18236780 (-) True AMCG00001185
AMCG00001179 mRNA downstream 420490 17977837 ~ 17989616 (-) True AMCG00001179
AMCG00001176 mRNA downstream 553317 17806233 ~ 17856789 (-) True AMCG00001176
AMCG00001171 mRNA downstream 641654 17757078 ~ 17768452 (-) True AMCG00001171
AMCG00001194 mRNA upstream 94799 18507549 ~ 18517536 (-) True AMCG00001194
AMCG00001193 mRNA upstream 111983 18524733 ~ 18532689 (-) True AMCG00001193
AMCG00001192 mRNA upstream 126245 18538995 ~ 18547799 (-) True AMCG00001192
AMCG00001198 mRNA upstream 135808 18548558 ~ 18553602 (-) True AMCG00001198
AMCG00001196 mRNA upstream 142485 18555235 ~ 18558151 (-) True AMCG00001196
TU161965 other downstream 1236429 17172870 ~ 17173677 (-) False AMCG00001156
TU161636 other downstream 2500980 15560345 ~ 15909126 (-) False AMCG00001127
TU161519 other downstream 2976637 15364067 ~ 15433469 (-) True AMCG00001118
TU161398 other downstream 3229784 15179241 ~ 15180322 (-) True G128741
TU161258 other downstream 3811536 14592699 ~ 14598570 (-) True G128628
TU162350 other upstream 112142 18524892 ~ 18525543 (-) False AMCG00001193
TU162357 other upstream 143080 18555830 ~ 18558217 (-) False AMCG00001196
TU162458 other upstream 476015 18888765 ~ 18889757 (-) True G129566
TU162897 other upstream 2834911 21247661 ~ 21270383 (-) True AMCG00001251
TU162985 other upstream 3197557 21610307 ~ 21648508 (-) False AMCG00001264

Expression Profile