RNA id: TU162701


Basic Information

Item Value
RNA id TU162701
length 380
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G129757
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 20596365 ~ 20596744 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

acggaacagaatctttgtgggtgaaacttttgaacaagagatctggaggattagcggtaggagtgtgttacaggccaccaaactcagatattcagaaagatgctgcattgtacagtgtaatcaggactgcatgtagcaaggatgtggctgttataatgggggatttcaatttcccaaacatagactgggaaagcccagtggggactacagaagcagaaatagaaatggttgagatggtaaatgactgctttctaactcaatttgtcagggaaccaaccagagagagcgcatgtattgacttgatcttttcaaatgaccaagatagagtcagggggacagtagttagagaaccaatggcaaattgtgatcacaatatggtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162680 lncRNA downstream 77435 20518444 ~ 20518930 (-) True G129736
TU162666 lncRNA downstream 173503 20422640 ~ 20422862 (-) True G129722
TU162656 lncRNA downstream 577400 20018697 ~ 20018965 (-) True G129712
TU162648 lncRNA downstream 658471 19937661 ~ 19937894 (-) True G129707
TU162540 lncRNA downstream 1513202 19076750 ~ 19083163 (-) True G129621
TU162751 lncRNA upstream 192997 20789741 ~ 20791835 (-) True G129802
TU162756 lncRNA upstream 248952 20845696 ~ 20845939 (-) True G129807
TU162801 lncRNA upstream 345313 20942057 ~ 20942449 (-) True G129844
TU162841 lncRNA upstream 480998 21077742 ~ 21078030 (-) True G129878
TU162896 lncRNA upstream 640730 21237474 ~ 21240024 (-) True G129927
AMCG00001231 mRNA downstream 14091 20568802 ~ 20582274 (-) True AMCG00001231
AMCG00001232 mRNA downstream 91541 20503852 ~ 20504824 (-) True AMCG00001232
AMCG00001233 mRNA downstream 140547 20454613 ~ 20455818 (-) True AMCG00001233
AMCG00001224 mRNA downstream 1103532 19491763 ~ 19492833 (-) True AMCG00001224
AMCG00001225 mRNA downstream 1117930 19477467 ~ 19478435 (-) True AMCG00001225
AMCG00001242 mRNA upstream 276882 20873626 ~ 20879379 (-) True AMCG00001242
AMCG00001247 mRNA upstream 411081 21007825 ~ 21021637 (-) True AMCG00001247
AMCG00001245 mRNA upstream 436314 21033058 ~ 21066211 (-) True AMCG00001245
AMCG00001246 mRNA upstream 531274 21128018 ~ 21154409 (-) True AMCG00001246
AMCG00001244 mRNA upstream 570228 21166972 ~ 21177803 (-) True AMCG00001244
TU162458 other downstream 1706608 18888765 ~ 18889757 (-) True G129566
TU162357 other downstream 2038148 18555830 ~ 18558217 (-) False AMCG00001196
TU162350 other downstream 2070822 18524892 ~ 18525543 (-) False AMCG00001193
TU161965 other downstream 3422688 17172870 ~ 17173677 (-) False AMCG00001156
TU161636 other downstream 4687239 15560345 ~ 15909126 (-) False AMCG00001127
TU162897 other upstream 650917 21247661 ~ 21270383 (-) True AMCG00001251
TU162985 other upstream 1013563 21610307 ~ 21648508 (-) False AMCG00001264
TU162984 other upstream 1192464 21789208 ~ 21822820 (-) True G130004
TU163107 other upstream 1662699 22259443 ~ 22302448 (-) True AMCG00001270
TU163259 other upstream 2014742 22611486 ~ 22614286 (-) False G130244

Expression Profile