RNA id: TU162751


Basic Information

Item Value
RNA id TU162751
length 2095
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G129802
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 20789741 ~ 20791835 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGATTGCACAAATCCTTTATTGTTCAGGATTAAATAGTACATGTTAACAAGCAGTCAAATGACATACAGACCAAACTgtatctgttttattgttttaacatcTACAAAAGCGTGttagcatattaaaataaatgtaaagtgattttcaaaacaacaactttttaaACATTGAGAAAACGTCATCTCTAAACATAAATCACTAAAACTCGCGATAGTGAGTTTCAACATTATggcacaatttgtatttattctttgaaTAGCTAAAGTGTCAAACCTCTTTGAAAACATGACATTGAAATGAAACACGGAACTGTAGGTAATAtacaatattgaattaaaaatgttccCTATAGACTTACTTATAGTGCTAGAGAATTGAGCTTGTTAAGAAGCagtgcttttttaaatagtgctttcaacaaatgtaataaaaatcacaaagtTTTATACTATTTACATACCTGTACTCTTTAAATTCTGTCTCTAATGATTGTCAAttgccttttgtattttttattttagcatttttattaatcatttaattagtcattttcatttagaaacatatctataaaaaaacataaaaataaacaaaaaaagatgtgAATCAGCAATCATGAAAACTCAAAATGGTCTTACTCATTTCATAGTACTGTAATTACAACTGTAGTAATAATGGTAAAAATCACTTCTCAGCACCtcaatgaggaaaataaatttcTTTCTCCTATGCTACATGCAGGACACATTCAGTATTGGATCTTTCCGGTAGAACCCCAGAGAATGTTACTTAatcatttcctttcatttggtTTTGGATTGGTGTAGTAAATTGAGTAAACGTCTGGTACATTACACTGTTGTGAATGTAAGCACTCAGATTCTCAGGcagtgtaaaaacacacacacacacacaaaaacacagattgcATTTGAAAGGCAAGACTCTTCTGACTAGTTCATGAAAATAGATGTTATGCACACCTTATGcacaattacatatttcagaagacaaatgtttcataataatacaaagtgtGCTGTGATTTTCTCCCCAAATCTCTTACCACATCACCACAATTTTAGTGGTGCTCGTCTTATAAGGTCTAAGAGAAACCCGGTTATACAGTACATcacatgaaaaaactaaacaaaaataaacatatgaaacaaatacagaCTTTAAGAAACAAGTCTGAATCCCCCACTCTTCTCCTTTCCTTGTTCAGTTCACTAATAAACAACTAAACTAAAcggattttgttttgcttttcttctcaGAAACATATTGCTAGCCATAGTCCTACTGCATTCATTAATCAATCATATTGAACAGTGCAATCAGATTAATTGGATGCCCCACTGTTTAATTGATTCTGTAAATGACCAGTTTTATtctacacaacaaacaaactactcGCGTGACTTTTCTAATGGGAAGTTTGCTTTGTCATAGTTCttcaaaataaactgtgttATTTACATCTATTGGACTGCCTTATATTAAGAGATTGATATCAGGAATTAAGCATCGTTAAGCAGTGGATTGGACtatgcacattttatttgcGTTATTGAACTGAACTTTCAACATCCACTGTCTTGGTTTTCttattgtttataaatatactgcaaaagcatttaaaaaaataaacttgtacttgtactttttatttatatgtgtatattctGTAATTTATAAATGAGAGTTCAGGAGTTTGGACATCCCCTATACACGTGCGTAGATTTCATTCTGGTCTAGACAAAGGAAATGATGACTTGACCATGCGGACAAGCCCATTCAAACTATGGCCCCCACTAGGcggaatgagccaaggagctgctgcaggggtGTTGTTTGGGGTGGAGAAGGGATGCAAAGCAGGGAATGCTGGGAATGTGCTTTTCTTGTCATAAACTCTGTCAGGTATGACAGTGGTCTTGCGCTCCTCCCGAAATTCGGTTTTATACTCCATTTATCcagtttatttcagaaaaaaaaatacatatatatatacaccgatcagccataacattatgaccagtgggtggaatatattaggcagcaagtgaacattttgtcctcaaagttgat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162701 lncRNA downstream 192997 20596365 ~ 20596744 (-) True G129757
TU162680 lncRNA downstream 270811 20518444 ~ 20518930 (-) True G129736
TU162666 lncRNA downstream 366879 20422640 ~ 20422862 (-) True G129722
TU162656 lncRNA downstream 770776 20018697 ~ 20018965 (-) True G129712
TU162648 lncRNA downstream 851847 19937661 ~ 19937894 (-) True G129707
TU162756 lncRNA upstream 53861 20845696 ~ 20845939 (-) True G129807
TU162801 lncRNA upstream 150222 20942057 ~ 20942449 (-) True G129844
TU162841 lncRNA upstream 285907 21077742 ~ 21078030 (-) True G129878
TU162896 lncRNA upstream 445639 21237474 ~ 21240024 (-) True G129927
TU162922 lncRNA upstream 541691 21333526 ~ 21333999 (-) True G129951
AMCG00001231 mRNA downstream 207467 20568802 ~ 20582274 (-) True AMCG00001231
AMCG00001232 mRNA downstream 284917 20503852 ~ 20504824 (-) True AMCG00001232
AMCG00001233 mRNA downstream 333923 20454613 ~ 20455818 (-) True AMCG00001233
AMCG00001224 mRNA downstream 1296908 19491763 ~ 19492833 (-) True AMCG00001224
AMCG00001225 mRNA downstream 1311306 19477467 ~ 19478435 (-) True AMCG00001225
AMCG00001242 mRNA upstream 81791 20873626 ~ 20879379 (-) True AMCG00001242
AMCG00001247 mRNA upstream 215990 21007825 ~ 21021637 (-) True AMCG00001247
AMCG00001245 mRNA upstream 241223 21033058 ~ 21066211 (-) True AMCG00001245
AMCG00001246 mRNA upstream 336183 21128018 ~ 21154409 (-) True AMCG00001246
AMCG00001244 mRNA upstream 375137 21166972 ~ 21177803 (-) True AMCG00001244
TU162458 other downstream 1899984 18888765 ~ 18889757 (-) True G129566
TU162357 other downstream 2231524 18555830 ~ 18558217 (-) False AMCG00001196
TU162350 other downstream 2264198 18524892 ~ 18525543 (-) False AMCG00001193
TU161965 other downstream 3616064 17172870 ~ 17173677 (-) False AMCG00001156
TU161636 other downstream 4880615 15560345 ~ 15909126 (-) False AMCG00001127
TU162897 other upstream 455826 21247661 ~ 21270383 (-) True AMCG00001251
TU162985 other upstream 818472 21610307 ~ 21648508 (-) False AMCG00001264
TU162984 other upstream 997373 21789208 ~ 21822820 (-) True G130004
TU163107 other upstream 1467608 22259443 ~ 22302448 (-) True AMCG00001270
TU163259 other upstream 1819651 22611486 ~ 22614286 (-) False G130244

Expression Profile