RNA id: TU162756


Basic Information

Item Value
RNA id TU162756
length 244
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G129807
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 20845696 ~ 20845939 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGCTGCTGCACACTGCTTGTTCCGATGATAGTAACACCCCAACAAATGCCACCAAAGAAGGGAAAGGTTAGCAGTTCATGTCTATTCACACGACACGTCACGTCAATGCATAAAAGTGTGgcataattattttagaatacaGTACTTCCAATGGTAGCTTACACATGAAACATACAAATTCATTGGTAAGTCGCTGGTTCCATATATATGATGAGCAATACGTTATTTAGCCTGCGTTTTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162751 lncRNA downstream 53861 20789741 ~ 20791835 (-) True G129802
TU162701 lncRNA downstream 248952 20596365 ~ 20596744 (-) True G129757
TU162680 lncRNA downstream 326766 20518444 ~ 20518930 (-) True G129736
TU162666 lncRNA downstream 422834 20422640 ~ 20422862 (-) True G129722
TU162656 lncRNA downstream 826731 20018697 ~ 20018965 (-) True G129712
TU162801 lncRNA upstream 96118 20942057 ~ 20942449 (-) True G129844
TU162841 lncRNA upstream 231803 21077742 ~ 21078030 (-) True G129878
TU162896 lncRNA upstream 391535 21237474 ~ 21240024 (-) True G129927
TU162922 lncRNA upstream 487587 21333526 ~ 21333999 (-) True G129951
TU163022 lncRNA upstream 1155788 22001727 ~ 22084497 (-) True G130033
AMCG00001231 mRNA downstream 263422 20568802 ~ 20582274 (-) True AMCG00001231
AMCG00001232 mRNA downstream 340872 20503852 ~ 20504824 (-) True AMCG00001232
AMCG00001233 mRNA downstream 389878 20454613 ~ 20455818 (-) True AMCG00001233
AMCG00001224 mRNA downstream 1352863 19491763 ~ 19492833 (-) True AMCG00001224
AMCG00001225 mRNA downstream 1367261 19477467 ~ 19478435 (-) True AMCG00001225
AMCG00001242 mRNA upstream 27687 20873626 ~ 20879379 (-) True AMCG00001242
AMCG00001247 mRNA upstream 161886 21007825 ~ 21021637 (-) True AMCG00001247
AMCG00001245 mRNA upstream 187119 21033058 ~ 21066211 (-) True AMCG00001245
AMCG00001246 mRNA upstream 282079 21128018 ~ 21154409 (-) True AMCG00001246
AMCG00001244 mRNA upstream 321033 21166972 ~ 21177803 (-) True AMCG00001244
TU162458 other downstream 1955939 18888765 ~ 18889757 (-) True G129566
TU162357 other downstream 2287479 18555830 ~ 18558217 (-) False AMCG00001196
TU162350 other downstream 2320153 18524892 ~ 18525543 (-) False AMCG00001193
TU161965 other downstream 3672019 17172870 ~ 17173677 (-) False AMCG00001156
TU161636 other downstream 4936570 15560345 ~ 15909126 (-) False AMCG00001127
TU162897 other upstream 401722 21247661 ~ 21270383 (-) True AMCG00001251
TU162985 other upstream 764368 21610307 ~ 21648508 (-) False AMCG00001264
TU162984 other upstream 943269 21789208 ~ 21822820 (-) True G130004
TU163107 other upstream 1413504 22259443 ~ 22302448 (-) True AMCG00001270
TU163259 other upstream 1765547 22611486 ~ 22614286 (-) False G130244

Expression Profile