RNA id: TU163046


Basic Information

Item Value
RNA id TU163046
length 2368
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G130055
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 22079082 ~ 22082918 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

acttaCAACTTTCCTCAAGATGTTTTCCCCGTATCGGTCTGAGAACTGGGTGTGTGTGGATGGCAAGGAGACATCTACATCACCTGTAGGTCTGCGGCAGTTCTCACAGCGCCAGCCCTGCAGGGGGAAGATTTCCACACAATGAAACGCCCTCTATATACTCCCCATATTAACACTGCACAGGCATGGGGAATAACTGGGAAATTCAGTTTTCTGTGGCTGTTTACTCCCAATACACCAATACTGATTTGCATGTCAAACAGTGAAAAAGATTAACAAAGACCAGGAGACATTTATGACCtccaaaaagcattttaaagacCTTTAGATGGGACTTCAGCATCAGAACATGCCTGAGAAAGTGGGGTTGCTGATTGGCAGTTCACTATGAGCCAGGGAAGGGCAGCACCACACAGTGCTACACAAAAGGAGCAGAAGAGTGACCTTACCTGCTGTCCACCGAAGCAAGTGCAGGTGCAGATAGCTCCCAGATACTCCTTCTGCCACTGCTGTCCTACCTGGTACATCTTCCCTTCATCATAGCAGGTAGCCTCATCTATACAGATATTAAAAAGTGATTGATAGGAATGATTTTAGTCAGGATTTCTTAATGAAGAATATAATTAAAGCAAGCTTGAATTTACAGAATCcctttgtaaaaatgtttacCTGCAGTAAACATGCTGCTCTGCTTTTTTAATCTCAAAGTTCAGAAAGACcatcaaaaacaagaacattgaGGTTTCAATTACCATAACTTCAGAAAAACTAAGGACAATGCCTCAACTTTtactaacaaaatatatttaactattGTCCTGCAAGAAATGGCATGTTAGACAAATTAATGGGTTAGAATTAATTCAGGGTATGTGTTCCAGTCATACAATTATCATTACAGCTTTAGAAAGGCTCAAAAAGCTTGAttgtaacaatatttttaaagtcagaattacttaattgatatGATATTCATTAATATAGTTGACTGTTGTGCTCTCGGTCTCTTAATTCAAAACAACTCCGAGTCCCTGCCATCAGTTTTGTTTGGGTTCTCAGGTAAATTACGCTTTAATTCAGGTCGAGAATGGAATAAAACGTGTGTAACACTTACGAGGTTCGCACTTGAACTCTCCTTTGCCATTGCCCAGACACGTGCAGCTCATCATGTGTCCGTTCTCTGCCTGACGGTCCCATTTCTCACCAATCCTGTAGTTGTTGCTGTTGTCGTGACACCATGGATGAATCACATCTGAAATGACCACTGCCAAAGCCCAAGCAAGTGCACCACAGCTTAAAGCCGGTCTCGGACATGCGCTCCCACTCGGACCCGACTTCGTGGTACGTTGCAGTGAAAGTGTCATAGCACATGTCTTTTGCAGGAGCTCCATCTGAAAATGGGAAAggtcaaaagaaaaataattgcattagtCAGTGCAGTGCTTTCAAAAGTGTAGTTTTCAAGTCCATTCACAAGACTGATAATTGTTGGCCAAATTCATGTCTGTTTTATATGCATCAACACTTACAATCATGTCCACAACATCCATATTCTACCCATTTGATATTACAGGAGATATTTTGCATCCTGGATTCAGAAATTTAAGTAGCTCTTTCCAACATTGATCTCCTGAAACCTTGCTGGATTCAACACAGGGACAACTTGGTCTTAACCCCATTTCACACAAGCATCAGGTCACCCAAAAGAAAACTTATTTTGCTTGTTGACAAGTAACATGTACTTCTCTATAAATCTGAAtcttctaaaacaaataattcccAAGACAGAACATTTTCCAATGCCTCCAGGTTGAACAGAGCCTGCACAATGTTGGCATGAAAAGGGCATAAAAGTACAGCACCTTTGGAGTTAAGATGGTAACATAGTCAAGCATTTCTGCTCCTACCAGTATTTTGTACTGTGATGATCTCCTCTAAAACCTTCTGCTTCAACGCTCCTTTCAAGGCCTCAACGATGACGTTGTAGGAAGCTCCAGATGTGAGGCCAGTTAGGGTAGCGCTGGTGGCAGTTCCTGGCACACGGAactaaggaaacaaaaaatgaaaccacttgaaattgttaaaatatatcattgtTTCTGACTGGGCATAATGCTAATGCAGCCTTTGAAACAGAATAGCAGAATCCTTCCACAATCGTACATTCCCGTTCTCCATAGTAGAACCCTGTGTGGCCGCAACATAGGGGCAGAGGCAGGCCTGTTTGGAGTGGAACGGCTTGACCGGCAACACTCATAGTCAGCTGGGAAGTAACAGCACGTCCCTAAAATCTCGCCACCTCTTCAATCAAAagatcaataataaaacaaatccacatgcagttttaaaaatataaattttaattGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162922 lncRNA downstream 745083 21333526 ~ 21333999 (-) True G129951
TU162896 lncRNA downstream 839058 21237474 ~ 21240024 (-) True G129927
TU162841 lncRNA downstream 1001052 21077742 ~ 21078030 (-) True G129878
TU162801 lncRNA downstream 1136633 20942057 ~ 20942449 (-) True G129844
TU162756 lncRNA downstream 1233143 20845696 ~ 20845939 (-) True G129807
TU163091 lncRNA upstream 119128 22202046 ~ 22208897 (-) True AMCG00001268
TU163096 lncRNA upstream 150244 22233162 ~ 22233765 (-) True G130101
TU163100 lncRNA upstream 170833 22253751 ~ 22254154 (-) True G130105
TU163217 lncRNA upstream 377841 22460759 ~ 22464876 (-) True AMCG00001274
TU163228 lncRNA upstream 420033 22502951 ~ 22515412 (-) True G130215
AMCG00001262 mRNA downstream 118698 21953204 ~ 21960384 (-) True AMCG00001262
AMCG00001263 mRNA downstream 367163 21707427 ~ 21711919 (-) True AMCG00001263
AMCG00001261 mRNA downstream 384111 21686709 ~ 21694971 (-) True AMCG00001261
AMCG00001264 mRNA downstream 466606 21607837 ~ 21612476 (-) True AMCG00001264
AMCG00001258 mRNA downstream 525007 21553734 ~ 21554075 (-) True AMCG00001258
AMCG00001266 mRNA upstream 3073 22085991 ~ 22103093 (-) True AMCG00001266
AMCG00001267 mRNA upstream 53901 22136819 ~ 22143335 (-) True AMCG00001267
AMCG00001268 mRNA upstream 125878 22208796 ~ 22220416 (-) False AMCG00001268
AMCG00001270 mRNA upstream 180446 22263364 ~ 22272836 (-) False AMCG00001270
AMCG00001274 mRNA upstream 368668 22451586 ~ 22463847 (-) False AMCG00001274
TU162984 other downstream 256262 21789208 ~ 21822820 (-) True G130004
TU162985 other downstream 430574 21610307 ~ 21648508 (-) False AMCG00001264
TU162897 other downstream 808699 21247661 ~ 21270383 (-) True AMCG00001251
TU162458 other downstream 3189325 18888765 ~ 18889757 (-) True G129566
TU162357 other downstream 3520865 18555830 ~ 18558217 (-) False AMCG00001196
TU163107 other upstream 176525 22259443 ~ 22302448 (-) True AMCG00001270
TU163259 other upstream 528568 22611486 ~ 22614286 (-) False G130244
TU163521 other upstream 1640474 23723392 ~ 23725279 (-) True G130470
TU163698 other upstream 2321872 24404790 ~ 24419606 (-) True AMCG00001303
TU163711 other upstream 2352171 24435089 ~ 24439649 (-) True G130622

Expression Profile