RNA id: TU163096



Basic Information


Item Value
RNA id TU163096
length 604
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G130101
representative True

Chromosome Information


Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 22233162 ~ 22233765 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


tatgttgggtgtatttggataagagcatttgggctctgagctgaagcactgatctaaagaatacctctcccccccaaaaattatcagatttccttggctcatcagcttggaactggtttgcatcaaagtgacagttttgatggcaccgagaagaggccaaatagtttggaattctgctatgagatgtctggagaaaggggcctgtaggtgataaaaactctttgaagtggatgagagccgaaatccagacatagagctacgaacccaggccaaccggcatttccaaaagatggcatggattgacatcagtcataaatcaagcccccctccaataggacactgggggctgaaaccgaaatccaatcaaGAACTCAGggaccaatcacctattgatctgacagactataaggaACAGCGGAcagtctttctctttctctctctctctctcacctgaaccagaaactcgctgccacagctcaacctgtagctctgttgccagaaccggaaccagaaaccaaccaagtctttgccggcaagaGAAGAGTTAAACtaggagaaggagattgagccgtacaaagaattcttttaaaggactttattaaat

Function


GO: NA

KEGG:

id description
ko04512 ECM-receptor interaction
ko04510 Focal adhesion
ko04974 Protein digestion and absorption

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU163091 lncRNA downstream 24265 22202046 ~ 22208897 (-) True AMCG00001268
TU163022 lncRNA downstream 148665 22001727 ~ 22084497 (-) True G130033
TU163046 lncRNA downstream 150244 22079082 ~ 22082918 (-) True G130055
TU162922 lncRNA downstream 899163 21333526 ~ 21333999 (-) True G129951
TU162896 lncRNA downstream 993138 21237474 ~ 21240024 (-) True G129927
TU163100 lncRNA upstream 19986 22253751 ~ 22254154 (-) True G130105
TU163217 lncRNA upstream 226994 22460759 ~ 22464876 (-) True AMCG00001274
TU163228 lncRNA upstream 269186 22502951 ~ 22515412 (-) True G130215
TU163258 lncRNA upstream 373377 22607142 ~ 22614286 (-) True G130244
TU163266 lncRNA upstream 421152 22654917 ~ 22741107 (-) True G130251
AMCG00001268 mRNA downstream 12746 22208796 ~ 22220416 (-) False AMCG00001268
AMCG00001267 mRNA downstream 89827 22136819 ~ 22143335 (-) True AMCG00001267
AMCG00001266 mRNA downstream 130069 22085991 ~ 22103093 (-) True AMCG00001266
AMCG00001262 mRNA downstream 272778 21953204 ~ 21960384 (-) True AMCG00001262
AMCG00001263 mRNA downstream 521243 21707427 ~ 21711919 (-) True AMCG00001263
AMCG00001270 mRNA upstream 29599 22263364 ~ 22272836 (-) False AMCG00001270
AMCG00001274 mRNA upstream 217821 22451586 ~ 22463847 (-) False AMCG00001274
AMCG00001273 mRNA upstream 237461 22471226 ~ 22497944 (-) True AMCG00001273
AMCG00001281 mRNA upstream 548126 22781891 ~ 22784507 (-) True AMCG00001281
AMCG00001280 mRNA upstream 570509 22804274 ~ 22823565 (-) True AMCG00001280
TU162984 other downstream 410342 21789208 ~ 21822820 (-) True G130004
TU162985 other downstream 584654 21610307 ~ 21648508 (-) False AMCG00001264
TU162897 other downstream 962779 21247661 ~ 21270383 (-) True AMCG00001251
TU162458 other downstream 3343405 18888765 ~ 18889757 (-) True G129566
TU162357 other downstream 3674945 18555830 ~ 18558217 (-) False AMCG00001196
TU163107 other upstream 25678 22259443 ~ 22302448 (-) True AMCG00001270
TU163259 other upstream 377721 22611486 ~ 22614286 (-) False G130244
TU163521 other upstream 1489627 23723392 ~ 23725279 (-) True G130470
TU163698 other upstream 2171025 24404790 ~ 24419606 (-) True AMCG00001303
TU163711 other upstream 2201324 24435089 ~ 24439649 (-) True G130622

Expression Profile