RNA id: TU163517


Basic Information

Item Value
RNA id TU163517
length 249
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G130466
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 23708720 ~ 23708968 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

caccgatcagccataacattatgaccactgacaggtgaagtgaataacactgataatctcgttatcatggcacctgtcagtgggtgggatatattaggcagcaagtgaacattttgtcctcaaagttgatgtgttagaagcaggaaaaatgggcaagcgcaaggatctgagcgactttgacaagggccaaattgtgatagctagacgactgggtcagagcatctccaaaactgcagctcttgtggggtg

Function

GO: NA

KEGG:

id description
ko04913 Ovarian steroidogenesis
ko04927 Cortisol synthesis and secretion

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU163515 lncRNA downstream 20563 23687827 ~ 23688157 (-) True G130464
TU163504 lncRNA downstream 23208 23684874 ~ 23685512 (-) True G130456
TU163443 lncRNA downstream 153006 23539817 ~ 23555714 (-) False AMCG00001291
TU163401 lncRNA downstream 424993 23283476 ~ 23283727 (-) True G130367
TU163398 lncRNA downstream 428301 23280208 ~ 23280419 (-) True G130364
TU163520 lncRNA upstream 12855 23721823 ~ 23722067 (-) True G130469
TU163523 lncRNA upstream 19655 23728623 ~ 23728858 (-) True G130472
TU163527 lncRNA upstream 25718 23734686 ~ 23734910 (-) True G130476
TU163528 lncRNA upstream 27266 23736234 ~ 23736592 (-) True G130477
TU163529 lncRNA upstream 27712 23736680 ~ 23736978 (-) True G130478
AMCG00001293 mRNA downstream 87798 23616471 ~ 23620922 (-) True AMCG00001293
AMCG00001291 mRNA downstream 161411 23509831 ~ 23547309 (-) True AMCG00001291
AMCG00001290 mRNA downstream 309739 23342817 ~ 23398981 (-) True AMCG00001290
AMCG00001289 mRNA downstream 440769 23247525 ~ 23267951 (-) True AMCG00001289
AMCG00001287 mRNA downstream 519773 23176343 ~ 23188947 (-) True AMCG00001287
AMCG00001295 mRNA upstream 157653 23866621 ~ 23884688 (-) True AMCG00001295
AMCG00001296 mRNA upstream 405332 24114300 ~ 24142020 (-) True AMCG00001296
AMCG00001301 mRNA upstream 646121 24355089 ~ 24365595 (-) True AMCG00001301
AMCG00001304 mRNA upstream 665707 24374675 ~ 24375851 (-) True AMCG00001304
AMCG00001308 mRNA upstream 666936 24375904 ~ 24382811 (-) True AMCG00001308
TU163259 other downstream 1094434 22611486 ~ 22614286 (-) False G130244
TU163107 other downstream 1406272 22259443 ~ 22302448 (-) True AMCG00001270
TU162984 other downstream 1885900 21789208 ~ 21822820 (-) True G130004
TU162985 other downstream 2060212 21610307 ~ 21648508 (-) False AMCG00001264
TU162897 other downstream 2438337 21247661 ~ 21270383 (-) True AMCG00001251
TU163521 other upstream 14424 23723392 ~ 23725279 (-) True G130470
TU163698 other upstream 695822 24404790 ~ 24419606 (-) True AMCG00001303
TU163711 other upstream 726121 24435089 ~ 24439649 (-) True G130622
TU163736 other upstream 917874 24626842 ~ 24646001 (-) False AMCG00001316
TU163741 other upstream 959978 24668946 ~ 24685570 (-) False AMCG00001316

Expression Profile