RNA id: TU163520


Basic Information

Item Value
RNA id TU163520
length 245
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G130469
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 23721823 ~ 23722067 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGGTCTTCCGATTTGGGAATGGGATTGGTGCAGCGCTGGCTGTTATACTTGGCCACATATTCACATTGCTTGAAGGGGGCGGTCTTGTCCTCAAGGACGTGGCGGATACAGAAGGCGTAGCCGTTGAGTCGGCGCTGCTTGCAGAGCTTGGGGCTATAGGAGCACAATGGCTTATTGTCCACCTCCGAGAAGTGTATGTGTTTGCCTTCATACATCACGTGACTCTTGTCCTTGTGAACATCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU163517 lncRNA downstream 12855 23708720 ~ 23708968 (-) True G130466
TU163515 lncRNA downstream 33666 23687827 ~ 23688157 (-) True G130464
TU163504 lncRNA downstream 36311 23684874 ~ 23685512 (-) True G130456
TU163443 lncRNA downstream 166109 23539817 ~ 23555714 (-) False AMCG00001291
TU163401 lncRNA downstream 438096 23283476 ~ 23283727 (-) True G130367
TU163523 lncRNA upstream 6556 23728623 ~ 23728858 (-) True G130472
TU163527 lncRNA upstream 12619 23734686 ~ 23734910 (-) True G130476
TU163528 lncRNA upstream 14167 23736234 ~ 23736592 (-) True G130477
TU163529 lncRNA upstream 14613 23736680 ~ 23736978 (-) True G130478
TU163530 lncRNA upstream 16069 23738136 ~ 23738438 (-) True G130479
AMCG00001293 mRNA downstream 100901 23616471 ~ 23620922 (-) True AMCG00001293
AMCG00001291 mRNA downstream 174514 23509831 ~ 23547309 (-) True AMCG00001291
AMCG00001290 mRNA downstream 322842 23342817 ~ 23398981 (-) True AMCG00001290
AMCG00001289 mRNA downstream 453872 23247525 ~ 23267951 (-) True AMCG00001289
AMCG00001287 mRNA downstream 532876 23176343 ~ 23188947 (-) True AMCG00001287
AMCG00001295 mRNA upstream 144554 23866621 ~ 23884688 (-) True AMCG00001295
AMCG00001296 mRNA upstream 392233 24114300 ~ 24142020 (-) True AMCG00001296
AMCG00001301 mRNA upstream 633022 24355089 ~ 24365595 (-) True AMCG00001301
AMCG00001304 mRNA upstream 652608 24374675 ~ 24375851 (-) True AMCG00001304
AMCG00001308 mRNA upstream 653837 24375904 ~ 24382811 (-) True AMCG00001308
TU163259 other downstream 1107537 22611486 ~ 22614286 (-) False G130244
TU163107 other downstream 1419375 22259443 ~ 22302448 (-) True AMCG00001270
TU162984 other downstream 1899003 21789208 ~ 21822820 (-) True G130004
TU162985 other downstream 2073315 21610307 ~ 21648508 (-) False AMCG00001264
TU162897 other downstream 2451440 21247661 ~ 21270383 (-) True AMCG00001251
TU163521 other upstream 1325 23723392 ~ 23725279 (-) True G130470
TU163698 other upstream 682723 24404790 ~ 24419606 (-) True AMCG00001303
TU163711 other upstream 713022 24435089 ~ 24439649 (-) True G130622
TU163736 other upstream 904775 24626842 ~ 24646001 (-) False AMCG00001316
TU163741 other upstream 946879 24668946 ~ 24685570 (-) False AMCG00001316

Expression Profile