RNA id: TU163523


Basic Information

Item Value
RNA id TU163523
length 236
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G130472
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 23728623 ~ 23728858 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTGGCAtttgactatgatgttgtaggagtgacagaaacgtGGCTTATgaaaaatgatggggatgaatacaagttgaaaggataaacacacagtttaggagagaccggcataatcgaagaggtggtggggtagcattatatagaaatgacattgaggcagaagaactcaaattagatcctggtaaacaaaacagaatctatgtgagttaaacttttgaataaaagatctgtgGCCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU163520 lncRNA downstream 6556 23721823 ~ 23722067 (-) True G130469
TU163517 lncRNA downstream 19655 23708720 ~ 23708968 (-) True G130466
TU163515 lncRNA downstream 40466 23687827 ~ 23688157 (-) True G130464
TU163504 lncRNA downstream 43111 23684874 ~ 23685512 (-) True G130456
TU163443 lncRNA downstream 172909 23539817 ~ 23555714 (-) False AMCG00001291
TU163527 lncRNA upstream 5828 23734686 ~ 23734910 (-) True G130476
TU163528 lncRNA upstream 7376 23736234 ~ 23736592 (-) True G130477
TU163529 lncRNA upstream 7822 23736680 ~ 23736978 (-) True G130478
TU163530 lncRNA upstream 9278 23738136 ~ 23738438 (-) True G130479
TU163531 lncRNA upstream 10121 23738979 ~ 23739260 (-) True G130480
AMCG00001293 mRNA downstream 107701 23616471 ~ 23620922 (-) True AMCG00001293
AMCG00001291 mRNA downstream 181314 23509831 ~ 23547309 (-) True AMCG00001291
AMCG00001290 mRNA downstream 329642 23342817 ~ 23398981 (-) True AMCG00001290
AMCG00001289 mRNA downstream 460672 23247525 ~ 23267951 (-) True AMCG00001289
AMCG00001287 mRNA downstream 539676 23176343 ~ 23188947 (-) True AMCG00001287
AMCG00001295 mRNA upstream 137763 23866621 ~ 23884688 (-) True AMCG00001295
AMCG00001296 mRNA upstream 385442 24114300 ~ 24142020 (-) True AMCG00001296
AMCG00001301 mRNA upstream 626231 24355089 ~ 24365595 (-) True AMCG00001301
AMCG00001304 mRNA upstream 645817 24374675 ~ 24375851 (-) True AMCG00001304
AMCG00001308 mRNA upstream 647046 24375904 ~ 24382811 (-) True AMCG00001308
TU163521 other downstream 3344 23723392 ~ 23725279 (-) True G130470
TU163259 other downstream 1114337 22611486 ~ 22614286 (-) False G130244
TU163107 other downstream 1426175 22259443 ~ 22302448 (-) True AMCG00001270
TU162984 other downstream 1905803 21789208 ~ 21822820 (-) True G130004
TU162985 other downstream 2080115 21610307 ~ 21648508 (-) False AMCG00001264
TU163698 other upstream 675932 24404790 ~ 24419606 (-) True AMCG00001303
TU163711 other upstream 706231 24435089 ~ 24439649 (-) True G130622
TU163736 other upstream 897984 24626842 ~ 24646001 (-) False AMCG00001316
TU163741 other upstream 940088 24668946 ~ 24685570 (-) False AMCG00001316
TU163769 other upstream 1097435 24826293 ~ 24836873 (-) True G130667

Expression Profile