RNA id: TU163667


Basic Information

Item Value
RNA id TU163667
length 1950
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G130591
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 24330250 ~ 24354241 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTTGCAGTTGCACAACTccacaaacaaactttattcacatcaagatacaaaataaatatttttttaatagatttttttctacTTGTTTGCTACAAGAATACAGCAACACTAGATTTTTTAACAATCagaataattataacaatatagTTTAAATAATGCTTCTGTGTTGGGGGAAGCAGCATTTTCAACACATATTTTGGTAGAATGTAAAACCATGACAAACGACTAGGACAGTCACTGTATCAGCCCATTCCACCAGCTGTGTAATCCTGCACTCTACTATGTTAGGAATGCTTTGTAACCCCTTTTTCAAACTCATCCTAAATTTGTTTTGGACACCAACTCCCGTAGGATAATTGGGGGGGAAAGCATCCAAACACCCCTTATAAAACCTTACTGTGGTAAAGTAAAATGACAGTAAAGTGTAGGACAGCAAAGGGAAATCATGGTAAAGCATGAAGAGGTATAAGTAaaccatttattaatttgacattttaatccaAAGTGACTTACATGGGAACTAAGCTAAGAATTTAAAGCCATCAAAATACTCTAGATTGGATTGGGCTGACAATggtcatttgtttgtttgcagtgaCTTTGCTTAGAAAGACAAGATTACAGACGAACTGAGATGGTTGAAATGTATGGAGAAAACACATGTTCAGCCCGAGTTAGAATCGCCAATGTTAGGCAATAGACTTCCCCCTTTAAATATCTATGACTTGCACACAGGTGGTATAGTGCCTCACACAATGCCTGGCAAAGGTTTCAAATTGCAAGAAAAAGTGGGATGATAAATACAGACATCTTGTCTTAAGTTGGCAAGACAGCTTTCCGAAAAACTTCAAATAGCCAAGAGAAACTTGAGATCTTGGTGAATAGTTGGTTCAAAGGTTTAAAGTACACAATATTAGAAACCAAAGAGCTCCTTTTAGAACAGTGACAGCACTTAAAATGACAATGGTGGGGTAGGGGCCTGATTTGATCTGTCTTTAAAACTCAGATGGAAAGATACCTAgtagaatgaaaatgtaaggaTTCGGCCTACTAAGGTTCAACCATAAATGTCTGACATAGCCTGTCACTGTGGCCTCTTATTTAACAGTGACACCCCCCTCAAGAGTCTCAAATGATAATGGTACCTGAATGgaatacagaaaataagtaaaataatcaaattactACTTTTCTGAAAGGATCTGGTCACGgtcaattttatatataaaaatgtttcccACACTACTGCTGCTCAATCTTTACAACTGTCTTTTTGTTCAGTATGATGCAGTTGTTTCAGACATCTTTTCAGGGTTGGATACAAGGCTCCAACTACATTTAGCGAGGAAATAACCTTTTAAATATTCCTTTTTGTAGAATGTGGGGAGATGTGGACAGGGGTCTTGATCGATACCAATTAAACGACATTGGTGTAACACTTACAGTCACAAAAAAGAACATTGCCgctaatgcattttgtttaatatgccATTTTTATTCAcctatatataattatgatggATATTTCTCCATAGCTCATCGAGCACTGACTCATCCTAGTAAGTACTAGTAAAGATTCTGGGTGTACAGTTTGAGTTCATACAAGGAgtgtcattaattaaaatgttctgacataccaatttgtttgtttttaaagtaactCTACAGAAGATGAAACCCCatttgtcttaaatacactgcAGGTATGTCTGATCCTAGAATAGAAATGGCTGAATTCCTTGATAATTTCCTGATCATTTTACAATGGTTTGTAATAAAGCTCTGCTTGTGTGAAAATAAGACATTAACCTAGATTGCCAAATATAAAGGCAATGACGAATATGTTAATCACCCCAGTTGAATATCAATATCTTAAATATCAAGTCTACTCCTTtccaagaaaaaatattttaaaaatgttatattacaagatttttttTGTTTGACTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU163646 lncRNA downstream 135846 24190999 ~ 24194404 (-) False G130574
TU163645 lncRNA downstream 135846 24192467 ~ 24194404 (-) True G130574
TU163588 lncRNA downstream 413032 23916993 ~ 23917218 (-) True G130528
TU163534 lncRNA downstream 559387 23770409 ~ 23770863 (-) True G130483
TU163533 lncRNA downstream 579140 23745753 ~ 23751110 (-) True G130482
TU163692 lncRNA upstream 40285 24394526 ~ 24400536 (-) True AMCG00001306
TU163699 lncRNA upstream 59862 24414103 ~ 24419606 (-) False AMCG00001303
TU163729 lncRNA upstream 222733 24576974 ~ 24578958 (-) True G130633
TU163744 lncRNA upstream 340567 24694808 ~ 24695031 (-) True G130646
TU163774 lncRNA upstream 560480 24914721 ~ 24914981 (-) True G130671
AMCG00001296 mRNA downstream 188230 24114300 ~ 24142020 (-) True AMCG00001296
AMCG00001295 mRNA downstream 445562 23866621 ~ 23884688 (-) True AMCG00001295
AMCG00001293 mRNA downstream 709328 23616471 ~ 23620922 (-) True AMCG00001293
AMCG00001291 mRNA downstream 782941 23509831 ~ 23547309 (-) True AMCG00001291
AMCG00001290 mRNA downstream 931269 23342817 ~ 23398981 (-) True AMCG00001290
AMCG00001301 mRNA upstream 848 24355089 ~ 24365595 (-) True AMCG00001301
AMCG00001304 mRNA upstream 20434 24374675 ~ 24375851 (-) True AMCG00001304
AMCG00001308 mRNA upstream 21663 24375904 ~ 24382811 (-) True AMCG00001308
AMCG00001306 mRNA upstream 45538 24399779 ~ 24400546 (-) False AMCG00001306
AMCG00001303 mRNA upstream 50546 24404787 ~ 24419606 (-) False AMCG00001303
TU163521 other downstream 604971 23723392 ~ 23725279 (-) True G130470
TU163259 other downstream 1715964 22611486 ~ 22614286 (-) False G130244
TU163107 other downstream 2027802 22259443 ~ 22302448 (-) True AMCG00001270
TU162984 other downstream 2507430 21789208 ~ 21822820 (-) True G130004
TU162985 other downstream 2681742 21610307 ~ 21648508 (-) False AMCG00001264
TU163698 other upstream 50549 24404790 ~ 24419606 (-) True AMCG00001303
TU163711 other upstream 80848 24435089 ~ 24439649 (-) True G130622
TU163736 other upstream 272601 24626842 ~ 24646001 (-) False AMCG00001316
TU163741 other upstream 314705 24668946 ~ 24685570 (-) False AMCG00001316
TU163769 other upstream 472052 24826293 ~ 24836873 (-) True G130667

Expression Profile