RNA id: TU163796


Basic Information

Item Value
RNA id TU163796
length 221
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G130693
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 25086659 ~ 25086879 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAAAAGAACTCTGGAGAACTTTTTGAACAGCTGTAAAAGCAGGTACACCAGGCCGTGGATCtttatacagcattctcttgAGCATGTTGGGGAGGGCATccactgttttcacaatatCCTCAACTAGCAATGTCACATTAGGATTACCAGtatcatacaaatcaccaaactTGTGAGCTATTAGAGTGAGGATGGCATCTTCAAGCAGAGATTCCtcaaac

Function

GO:

id name namespace
GO:0072329 monocarboxylic acid catabolic process biological_process
GO:0017001 antibiotic catabolic process biological_process
GO:0042737 drug catabolic process biological_process
GO:0019541 propionate metabolic process biological_process
GO:0019543 propionate catabolic process biological_process
GO:0009062 fatty acid catabolic process biological_process
GO:0019626 short-chain fatty acid catabolic process biological_process
GO:0046459 short-chain fatty acid metabolic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU163794 lncRNA downstream 1874 25084579 ~ 25084785 (-) True G130691
TU163793 lncRNA downstream 29739 25056621 ~ 25056920 (-) True G130690
TU163789 lncRNA downstream 61647 25024788 ~ 25025012 (-) True G130686
TU163781 lncRNA downstream 112575 24973879 ~ 24974084 (-) True G130678
TU163774 lncRNA downstream 171678 24914721 ~ 24914981 (-) True G130671
TU163801 lncRNA upstream 44543 25131422 ~ 25131795 (-) True G130698
TU163811 lncRNA upstream 114421 25201300 ~ 25202044 (-) True G130708
TU163854 lncRNA upstream 208500 25295379 ~ 25296852 (-) True G130739
TU163882 lncRNA upstream 293039 25379918 ~ 25383294 (-) False G130764
TU163884 lncRNA upstream 293039 25379918 ~ 25383294 (-) True G130764
AMCG00001321 mRNA downstream 76044 24982581 ~ 25010615 (-) True AMCG00001321
AMCG00001320 mRNA downstream 221343 24806005 ~ 24865316 (-) True AMCG00001320
AMCG00001318 mRNA downstream 369603 24716537 ~ 24717056 (-) True AMCG00001318
AMCG00001316 mRNA downstream 413549 24597569 ~ 24673110 (-) True AMCG00001316
AMCG00001305 mRNA downstream 615580 24439406 ~ 24471079 (-) True AMCG00001305
AMCG00001323 mRNA upstream 132223 25219102 ~ 25223511 (-) True AMCG00001323
AMCG00001326 mRNA upstream 156766 25243645 ~ 25246650 (-) True AMCG00001326
AMCG00001327 mRNA upstream 188940 25275819 ~ 25279969 (-) True AMCG00001327
AMCG00001336 mRNA upstream 490809 25577688 ~ 25584557 (-) True AMCG00001336
AMCG00001341 mRNA upstream 588689 25675568 ~ 25707676 (-) True AMCG00001341
TU163769 other downstream 249786 24826293 ~ 24836873 (-) True G130667
TU163741 other downstream 401089 24668946 ~ 24685570 (-) False AMCG00001316
TU163736 other downstream 440658 24626842 ~ 24646001 (-) False AMCG00001316
TU163711 other downstream 647010 24435089 ~ 24439649 (-) True G130622
TU163698 other downstream 667053 24404790 ~ 24419606 (-) True AMCG00001303
TU163842 other upstream 136017 25222896 ~ 25224928 (-) True G130735
TU163843 other upstream 136017 25222896 ~ 25246452 (-) False G130735
TU163851 other upstream 188923 25275802 ~ 25277397 (-) False AMCG00001327
TU163889 other upstream 302348 25389227 ~ 25413847 (-) True G130767
TU163894 other upstream 335045 25421924 ~ 25423354 (-) True G130771

Expression Profile