RNA id: TU163842


Basic Information

Item Value
RNA id TU163842
length 805
RNA type TUCP
GC content 0.54
exon number 2
gene id G130735
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 25222896 ~ 25246452 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGTAAAGTTTGCTCAACACGAAGTTGTTGGACAGGTTTTAGTGATTTCCTTTTTTAGGCAttgcaatgttgtttttcttgcttaCTTTAATTGGTGGTTGTAGACGTTGTGCTCTGAGGAAGGTAGGTGTTGGCTGTAGGTGTACCACTGTTTTTAGTTTAGATCCCAGGTGGACTGTAACCATCACTGATGCCCCCCTGCTTGATGGAGTCACAGGAAGCTGCCGCAGTGAGGCAGATATTGATGGCAAGGATGGTGCTGCTCAGCCTGTGGGCTATGGGGGGCGCTGTGGCTTTCCAGCAGACTGTCGTGCCTCTGTTGCCCAATGTGCCTTTCCTGATGGTATGGAATACCCCAACGCAGGCCTGCAAGACCAAGTACGGTGTGGACCTGGACCTCAGCCAGTTTGACATCTCACTGAACCAGAATGAGAGCTTCATGGGGGACAATATCACCATCTTCTACGACAACAAACTTGGCCGCTACCCTTTCTACACACCCCAGGGGGTACCAGTGAATGGGGGGGTGCCACAGAACGCCAGCCTATCAGAACACCTGCGCTACACATGGGCTGACATTGAGCGGTACATCCCGCACTTTACTTACTCAGGCCTGGCGGTTGTGGACTGGGAGAGCTGGCGACCACTGTGGGTGCAGAACTGGGATGCCAAACAGGTGTACAAGGAGGCCTCCAGGGCACTGGTGCGGCAGAAGCACCCCAATTGGACCACGCTTCAAGTGGAAAGCGAGGCCCAGAGGGAATTCCAGAAGGCTGGCCGGGCGTTCATGGAGGATACACTCAAGC

Function

GO: NA

KEGG:

id description
ko04110 Cell cycle
ko04114 Oocyte meiosis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU163811 lncRNA downstream 20852 25201300 ~ 25202044 (-) True G130708
TU163801 lncRNA downstream 91101 25131422 ~ 25131795 (-) True G130698
TU163796 lncRNA downstream 136017 25086659 ~ 25086879 (-) True G130693
TU163794 lncRNA downstream 138111 25084579 ~ 25084785 (-) True G130691
TU163793 lncRNA downstream 165976 25056621 ~ 25056920 (-) True G130690
TU163854 lncRNA upstream 70451 25295379 ~ 25296852 (-) True G130739
TU163882 lncRNA upstream 154990 25379918 ~ 25383294 (-) False G130764
TU163884 lncRNA upstream 154990 25379918 ~ 25383294 (-) True G130764
TU163892 lncRNA upstream 196101 25421029 ~ 25421344 (-) True G130769
TU163898 lncRNA upstream 206515 25431443 ~ 25431667 (-) True G130775
AMCG00001321 mRNA downstream 212281 24982581 ~ 25010615 (-) True AMCG00001321
AMCG00001320 mRNA downstream 357580 24806005 ~ 24865316 (-) True AMCG00001320
AMCG00001318 mRNA downstream 505840 24716537 ~ 24717056 (-) True AMCG00001318
AMCG00001316 mRNA downstream 549786 24597569 ~ 24673110 (-) True AMCG00001316
AMCG00001305 mRNA downstream 751817 24439406 ~ 24471079 (-) True AMCG00001305
AMCG00001326 mRNA upstream 18717 25243645 ~ 25246650 (-) True AMCG00001326
AMCG00001327 mRNA upstream 50891 25275819 ~ 25279969 (-) True AMCG00001327
AMCG00001336 mRNA upstream 352760 25577688 ~ 25584557 (-) True AMCG00001336
AMCG00001341 mRNA upstream 450640 25675568 ~ 25707676 (-) True AMCG00001341
AMCG00001340 mRNA upstream 483923 25708851 ~ 25716069 (-) True AMCG00001340
TU163769 other downstream 386023 24826293 ~ 24836873 (-) True G130667
TU163741 other downstream 537326 24668946 ~ 24685570 (-) False AMCG00001316
TU163736 other downstream 576895 24626842 ~ 24646001 (-) False AMCG00001316
TU163711 other downstream 783247 24435089 ~ 24439649 (-) True G130622
TU163698 other downstream 803290 24404790 ~ 24419606 (-) True AMCG00001303
TU163851 other upstream 50874 25275802 ~ 25277397 (-) False AMCG00001327
TU163889 other upstream 164299 25389227 ~ 25413847 (-) True G130767
TU163894 other upstream 196996 25421924 ~ 25423354 (-) True G130771
TU163903 other upstream 216685 25441613 ~ 25442631 (-) True G130779

Expression Profile