RNA id: TU163889


Basic Information

Item Value
RNA id TU163889
length 1814
RNA type TUCP
GC content 0.44
exon number 4
gene id G130767
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 25389227 ~ 25413847 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCGGATTCATAGCACCTGTATCGGCGGCGGAGCAGTgcagtagcgtgtgcgaatcggggcagagagacaccagaccaGCCGCAGAGGTCTgcatgagctggagcgggtgggtagtagatgcaggctggccggccaggagggagtcgcagtatccaggcgggagaggaccagtgactggacgagcagctgagtcgagtggtcggtgaggaagggacggatccagcgtatgttgctcaggaagaaccTGCAGgtcACTGATCCGGATCTGGACTCCCCCCTGGGCAGCGTGATGAAGAGGGGATCCACCTCTGAGATGAGTCTCTCTGGGGAGCCTGAGCATCAGGATGGAGCCATGAGCCCTGAGACCAAGAGGCGACGGGAGATTCCAGGAGTGACATCATCTGAGAAGTCAACAGTAGAAGACTCTGATGAGAGAAGAGCTTCTGAAAGCAGCCCATCTGCTCTGCATTTATCCATTAATTCACTCAATGGATGCAACGTAGTGGCTCCTCAGATTCATAACTCTACTATCACAGAACCCGTTCATATCCATGTGAACAGCAGGGACCCTTCTACTTAAAAGGGTAAAGGACcttgtcattttgtattatttttataatgagaaTATACAAGATCTCACATTGTTCTGTAATTGACTTTATTctataatacacattattaatGGCATTTTGAATtcatgatataaaaataaacaaggagaTTAGCTAAAACAGCACAACTGAAAGCAGCCAAAATGTACAAATGGCCCTATTTAGAAATATTGCGCACTGGCAAAAGTGACTGTGTTAGCACTCTGTGATAATGCATACAATTGTGATTAATAAATCTAGTCTTGCTATGAGCtaacatacataaaacaatgccTAGCCAATCAAGACATGGATGTAGTAAGAAAACTGGGACTCATCATTCCCTTTAACAGCACCTCTGAGCACCTCCAAAACAGCATGATGGGTCTATATGTTAGGGCCTTGCTAGCTAACGTCAGCTAGATCCAGTGGGCTTGTGAAAAGCTGTGCAGGCACGAAGAGCCCATAGGGCAGGCCAGGACCAGATCCTTTTAAAGAGAACATGTGTCTGGCAGACACCTCAactcacattaaaaacaattaaacaaccCATTAATTCAGAGCATGCACATAAACTGCAGCAGAGACCAGCCTTCAAAGAAAACAGTGTCAGGCAAGCGGCTAGACTCTCAATCAGAACAGACCCCTTTAATATTGACCACAAACAGGTGCAGGAGCAGGCCCTTGCTTTTTCACTAGTCATTGAGTAtggtaaattaaactaaaatcagATTTAAGACTATGCCCTGTGGTCACAATGCTGGGCTTGATACagatgcactgaaggcagggaTATATTGCAAATGAAGGTGAATGTATTATACAGGGGGCAGGTGGTGATGAATATTACAACCAATTATTCCTATAAGTTTCACTTTGCtgttatttgcattattaattattcttgTTGCTAATAAATGCAATATTCTGGCTGCATGTGGAGACATAGCGGACGACGATTCATCAGGGCCGTGGACATTTGTTCTATATTGAGCAGcagtgggggacactgctgtagattgctctagtaaaacAGTTGTTTGGAAAAAAGCTGTATAcgttgtatgtaaaataatgtgatacgATATATTCTAACAAtggttaagggtgtctgctaagaaatataatatttctctCTAGGATATCTGGTTATGATGTAGTTTACgtacatatattttcacataaTTGTAGGTTTATGTTGGGCTTATCGTGCCTGCTGTgga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU163882 lncRNA downstream 5933 25379918 ~ 25383294 (-) False G130764
TU163884 lncRNA downstream 5933 25379918 ~ 25383294 (-) True G130764
TU163854 lncRNA downstream 92375 25295379 ~ 25296852 (-) True G130739
TU163811 lncRNA downstream 187183 25201300 ~ 25202044 (-) True G130708
TU163801 lncRNA downstream 257432 25131422 ~ 25131795 (-) True G130698
TU163892 lncRNA upstream 7182 25421029 ~ 25421344 (-) True G130769
TU163898 lncRNA upstream 17596 25431443 ~ 25431667 (-) True G130775
TU163900 lncRNA upstream 21069 25434916 ~ 25435119 (-) True G130777
TU163902 lncRNA upstream 23798 25437645 ~ 25440826 (-) True G130778
TU163905 lncRNA upstream 35409 25449256 ~ 25451074 (-) True G130781
AMCG00001327 mRNA downstream 109258 25275819 ~ 25279969 (-) True AMCG00001327
AMCG00001326 mRNA downstream 142577 25243645 ~ 25246650 (-) True AMCG00001326
AMCG00001323 mRNA downstream 165716 25219102 ~ 25223511 (-) True AMCG00001323
AMCG00001321 mRNA downstream 378612 24982581 ~ 25010615 (-) True AMCG00001321
AMCG00001320 mRNA downstream 523911 24806005 ~ 24865316 (-) True AMCG00001320
AMCG00001336 mRNA upstream 163841 25577688 ~ 25584557 (-) True AMCG00001336
AMCG00001341 mRNA upstream 261721 25675568 ~ 25707676 (-) True AMCG00001341
AMCG00001340 mRNA upstream 295004 25708851 ~ 25716069 (-) True AMCG00001340
AMCG00001339 mRNA upstream 313536 25727383 ~ 25734042 (-) True AMCG00001339
AMCG00001342 mRNA upstream 336495 25750342 ~ 25762406 (-) True AMCG00001342
TU163851 other downstream 111830 25275802 ~ 25277397 (-) False AMCG00001327
TU163843 other downstream 142775 25222896 ~ 25246452 (-) False G130735
TU163842 other downstream 164299 25222896 ~ 25224928 (-) True G130735
TU163769 other downstream 552354 24826293 ~ 24836873 (-) True G130667
TU163741 other downstream 703657 24668946 ~ 24685570 (-) False AMCG00001316
TU163894 other upstream 8077 25421924 ~ 25423354 (-) True G130771
TU163903 other upstream 27766 25441613 ~ 25442631 (-) True G130779

Expression Profile