RNA id: TU163905


Basic Information

Item Value
RNA id TU163905
length 1819
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G130781
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 25449256 ~ 25451074 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TAATAGTGGAAGCACCACAGTTCAAAGTGGATTTTGATTTTGTGCATTTGAAGCTTCAACAATGGTGGTGCGTCCACCTGCAGCCTGTTAGATCTGTGGAATCCTGACATTTGGTTGAActctttcttatttatttgaaatggagagagaatgtgtgtgatTTGATCAGAcgcaaaaaaattatataaagatAAAAGGTCTGTTCAGTCGAATTCCTCAGGACGTGGTTTAATTTTATGCTTTTGTGAACAGGTGAAGCTCACAGGAAAAGGTCTTCAACCTAAATGCTCTACCATTCAGTCTATAGCATACAGACTGCATTCCCAATTCCCCGTTCACGTCTAACCAAGCCAGAGGCGCACAGCAATTACAAATAGCCTGTTCATGCACTACTTGTGTCTTAATGAGAAAGTGAACCTCAGCGAAGAATGCCAGAGCTAAATTAGCATACCATTTTAGGCATAATTACATCTGAAAGTTATTCTGTTGGTGTTAtaatattaaagttaaaatatgttaatatgtaatgtaaatctCAACTGAATTCCTGCAATGTCCCTGAACAATTATTGTGTACTTCATCtaacaataaacaaatccattataaacttttataatgtaatgcttacaaataacagaaaaacataaaattaaccAGGAATGAATGAACATAAAAAAATCTCAAGTTAATAAattagtatatatacatattatatatatatatatatatatatatatatatatatatacatatatatatacatacacacacacattttatatatatataaattagtgttacagctttaaatataaacaaactgtacatttgacattaatattaatacaagaGAAAATATGGCAGTTTATATACATCCTATCAATTTATGAAAGATTTTCCTTTAAGGGCTAATGGCTGTTAAAAACCATCACTTATCTGTTAGAATCCTCACTCTTTGCAATGCATCTGCAAAAGGAACTGAATTTTGTTCCACCTCCattctccttttttaaattaccaaTCAACACCAGTCACTCACTCAATGCCTAATGTTATCTTAAGCCTAAAATAACTACAGCATACTGGCCTTATAATTAGAATTTTCTACTAACAAAGGTAGCTGATCACACACTGCCAGGAAAACGTCCTGGTAtctttaatttgtgatttagtGCCACTCTGTCAGGGTATCTTAGagccattttaaatgatttcctCTTGACCTCGGTTTAAACTTCTTGGAGAGGCTGCAAAATATTAACAATTGCATTAATTACAACAGAGGAGATAAGCACAATGGGATACACCAATAAGGAAACTCCCTGGGTTACCCTTCCCGAGTGTTGAACAATATCAGCTTTTGTTCTTCCTTCATAAAAGCAAATTTAAATGTGtctggtcttttttttcccttcctttttcATGACTGGCTGAAAGACAATCGCAGCTCCTCCTCCCTCAGGGTCCTGTCCAATCGCAGCGTCTCGGCCTCCAGCACCGAGGGGAGTGTCTTCTGTGATACCAGGCTCAGCGAATCGGAGAGGTCCTGGCGCAGGGACAGCAACCACTGGCTGTTCCTGGAAGAGCGCTCGATGAACTCCGCTCTTTCTCGGAAGTCGACGGCCAACGTGAGCCGGAGATAGTGCACCTGCCGGTccaggagagaggaaagaaataaTCTGACTGATCATGTGGTTCCTACTGAGTTGCATGAATTGCAGTACAAAGCTCCTCATTGTGCACTTCCCCCTCAGAGCTCCCAAGTGCCATCGGTAGGGTATCTTTGCTGTCTATAAAAGTGTGGAGCACTACATAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU163902 lncRNA downstream 8430 25437645 ~ 25440826 (-) True G130778
TU163900 lncRNA downstream 14137 25434916 ~ 25435119 (-) True G130777
TU163898 lncRNA downstream 17589 25431443 ~ 25431667 (-) True G130775
TU163892 lncRNA downstream 27912 25421029 ~ 25421344 (-) True G130769
TU163882 lncRNA downstream 65962 25379918 ~ 25383294 (-) False G130764
TU164065 lncRNA upstream 674737 26125811 ~ 26132592 (-) True G130921
TU164092 lncRNA upstream 837474 26288548 ~ 26293255 (-) True G130944
TU164143 lncRNA upstream 1036119 26487193 ~ 26487686 (-) True G130980
TU164183 lncRNA upstream 1179162 26630236 ~ 26630628 (-) True G131015
TU164184 lncRNA upstream 1204937 26656011 ~ 26656252 (-) True G131016
AMCG00001327 mRNA downstream 169287 25275819 ~ 25279969 (-) True AMCG00001327
AMCG00001326 mRNA downstream 202606 25243645 ~ 25246650 (-) True AMCG00001326
AMCG00001323 mRNA downstream 225745 25219102 ~ 25223511 (-) True AMCG00001323
AMCG00001321 mRNA downstream 438641 24982581 ~ 25010615 (-) True AMCG00001321
AMCG00001320 mRNA downstream 583940 24806005 ~ 24865316 (-) True AMCG00001320
AMCG00001336 mRNA upstream 126614 25577688 ~ 25584557 (-) True AMCG00001336
AMCG00001341 mRNA upstream 224494 25675568 ~ 25707676 (-) True AMCG00001341
AMCG00001340 mRNA upstream 257777 25708851 ~ 25716069 (-) True AMCG00001340
AMCG00001339 mRNA upstream 276309 25727383 ~ 25734042 (-) True AMCG00001339
AMCG00001342 mRNA upstream 299268 25750342 ~ 25762406 (-) True AMCG00001342
TU163903 other downstream 6625 25441613 ~ 25442631 (-) True G130779
TU163894 other downstream 25902 25421924 ~ 25423354 (-) True G130771
TU163889 other downstream 35409 25389227 ~ 25413847 (-) True G130767
TU163851 other downstream 171859 25275802 ~ 25277397 (-) False AMCG00001327
TU163843 other downstream 202804 25222896 ~ 25246452 (-) False G130735

Expression Profile