RNA id: AMCG00001429


Basic Information

Item Value
RNA id AMCG00001429
length 3171
RNA type mRNA
GC content 0.59
exon number 19
gene id AMCG00001429
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 3986722 ~ 4013882 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTGTCTGATCCCATTTTGAATAACAACctcctttcctttgtttgtCCCGTCTCTCAAACAGTGCTCCTCATCCAGGGGGCCTTGTACTTTACCAAGGAACCCAAGTCCCAGGATGCCTTGCACGGCCGGAGTGCCATGCTGCGCTGCGAGGTCAGTAACCCGACGGAAGTGCACTACACCTGGCTGCAAAATGGCGAGCTGGTCCAGGACAACGAGCGCCGCTTCCAAGAGGGCAGCAACCTCAAGTTCACTGCCGTGGACCGCCAGCTGGACTCTGGCAACTTCCAGTGTGTGGCCAGCAACCCAGCCGGAGCAGAGGAGGCCCGCTCCACTAACGCCTCCTTCAACATTAAGTGGTTAGAGAGTGGAGGGGTCACGCTGAAGGAACCAGCCTCCGAGGCGGAGATCGAGAGCTCTGTGCCAATCACGCTGCGCTGCCACATTGATGGACATCCACGCCCAACCTGCCAGTGGTTCAGAGATGGCACCAAGCTGACAGAGAAAACCCACCAAATCAATAACAAGGAGCGCACGCTGACCATTAAGAGCGCCAGCCCTGATGACAATGGCCTCTACTATTGTTGTGCCAAGAACGCAGCCGGTCAAGTCTGCAGCAACGCCAACTTCACGCTCAACATTATAGATAAGAGTTTTCCAAGGCCGGTGGTCAGCCCTGAGGACCAGGTGGTCAACAAGAACGAGGAGGCCGTGTTCCACTGCCAGTTCACCGCGGAGCCGATGCCCAAGGTGGAGTGGTACCACGAAAACGAGCTGGTCACCAACAAGTCCAGGGTGATGGTGTTCAGCAATGGCACCCTCGTGATCATGCAGGTTAAGGCCCGCCTCACCGGGCAGTACAAATGTGTGGCCAGAGCGCCGAAAGGAAACGCCGTGAACCTGCAGGCCACACTGAGAATCGCAGAAATCGAGGACATGCCTCCCTCGATGACCAGGGTCTTCACAGGGGACACCATGCAGAGGGTGAGATGCCAGGCCCCCCAAGGACACCCTAAGCCCGAGGTGTGGTGGGAGAAGCAGGGGGTCCGCATCCCTTCCAGCGGCCGAATATACCAGGATGGCTTCGACCTGGTCTTCAGTCCCATCGAAGGGGGAGACTCGGGCAACTACACCTGCGTGGCTGAGAACAAGGCCGGGGAGAAGAGGCAGGAGCTCAGCGTAACTGTGGCCACAATCCCAGAGTGGGTGACCAGGCCTGGGGACAGTCAACTGGAGGAGGGGAAGCCAGGCTTTCTGCACTGCCATGCCAGAGCCACCCCCGAGCCCGCTGTCACCTGGTACCGCAACAACATCGAGATCCAATTTGGGGATGGCCGCTTCACAAAGCTTCCTAACGGGACCCTGCGCATCAACAACGTGGAGGTGTATGATGGGACGCTGTACCGCTGTCTTTGCAGCACTGAGGCTGGCTACATCCAGGGCCAGGCCCGAGTGCATGTGCTCGAGAAGCTGAAGttcacccctcccccccaggcTGTGCAGTGCATGGAGCTGGATAGAGAAATCACCGTGGTATGCTCCGCCACGGGCCGAGAGACCCCTGTCATCCAGTGGGTCAAAGCAGATGGCACTGAGATCCCCCCTCGGGTGAATCAGAGGAGTGGCGTGTTGCACTTCACAAAGGTGACACGCAGCGACGCGGGCAACTACACCTGTGTGGCGTCCAACAGCCTGCAGGGGGAGATCCGGGCGGCAGTTTACATCAACGTGGCAGtgttCATCTTGTTCAAGCTGGAGCCAGAGAACACCACAGTGTACCAGGGCCACACTGCCATCCTGCACTGCCAGGCCACCGGAGATCCCGAGCCCTCCATACAGTGGATGATCAAAGACAAAGTCCTAGACCCCAGCAAACACAGGTTTCAGAAGATGCCGAACGGCTCCCTGATCATCACGGACGTCTCCACAGAGGACACGGGCAAATACACCTGCATAGCTGGGAACAGCTGTAACATCAGGTCCAGTGTGGCTCAGCTCTACGTTGTAGAAAAACCTGTGACCAAGCTGACCAACGATGGGGAGAAAGCGCCCTACAAGATGATCCAGACCATCGGGCTTTCGGTGGGGGCGGCGGTGGCCTACATCATCATCGTGCTGGGGCTCATGTTCTACTGCAAGAAGAGACGCAATGCCAAGAGGCTGCAGAAGACCGTGGAGGGGGAAGAGCCAGAGATGGAGTGTTTGAATGGCGGGACAGTCCAGCAAAATGGCCAGACGACAGCGGAGATCCAAGAAGAGGTGGCACTGACCAACCTGGGCACCACGGCCACCACCAACAAGCGGCATAGCACCAACGACAAGATGCACTTCCCCCGGGCCAACCTGCAGACAATTACCACACTGGGGAAGGGCGAGTTTGGGGAGGTGCTCCTGGCCAAGGCAAAGGGGCTGGAGGAGGGCGAAGGGGAGACGGTGGTCCTGGTGAAGAGCCTGCAGACCCGCGACGAGCAGCTGCAGCTGGACTTCCGCCGTGAGTTTGAGATGTTCGGCAAACTCAACCACGCCAACGTCGTGCGGCTCCTTGGCCTGTGCCGGGAGGCCGAGCCCCACTACATGATCCTGGAATACGTGGACCTGggGGATTTGAAGCAGTTCCTGAGAATCTCCAAAAGCAAAGATGAGAAAATCAAGCCTCAGCCGATCAGCACCAAACAAAAAGTGTCCATCTGCGCCCAGGTGGCATTGGGGATGGAGCACCTCTCCAACCATCGCTTCGTCCACAAAGACCTGGCTGCCCGCAACTGCCTGATCTCCGCCCAGCGGCAGGTCAAGGTTTCAGCCCTCAGCCTGAGCAAAGACGTCTACAACAGTGAGTACTACCACTACCGCCAGGCCTGGATCCCCCTGCGCTGGCTGCCTGCTGAGTCGGTGTTCGAGGACGACTTCTCCACCAAGTCTGACGTGTGGTCCTACGGGGTGCTGATATGGGAGGTGTTCTCACACGGGGAGCTGCCCCACAGCAAGCTGAGCGACGACGAGGTCCTGGCAGGTCTGCAGTCTGGGAAGATGAAGCTGCCCCTGCCAGAGGGCTGTCCCTCCAAAATCTATAAGCTGATGGTGCGCTGCTGGGCCCCCAGCCTCAAAGACCGGCCTTCGTTCAGCGAGATCGCAAACGCTCTGGGGGAGCTGCCCACGGACAGCAAAGTGTGA

Function

GO: NA

KEGG:

id description
K05127 PTK7, CCK4; PTK7 protein tyrosine kinase 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198690 lncRNA upstream 69649 3881842 ~ 3917073 (+) False G157783
TU198691 lncRNA upstream 69649 3886798 ~ 3917073 (+) True G157783
TU198626 lncRNA upstream 221360 3748554 ~ 3765362 (+) True AMCG00001436
TU198555 lncRNA upstream 493553 3489063 ~ 3493169 (+) True G157668
TU198517 lncRNA upstream 549059 3436345 ~ 3437663 (+) True G157640
TU198740 lncRNA downstream 8915 4022797 ~ 4023248 (+) False AMCG00001433
TU198757 lncRNA downstream 53206 4067088 ~ 4067627 (+) True G157834
TU198914 lncRNA downstream 621482 4635364 ~ 4652000 (+) False AMCG00001457
TU198915 lncRNA downstream 682672 4696554 ~ 4702861 (+) True G157966
TU198925 lncRNA downstream 700013 4713895 ~ 4714160 (+) True G157975
AMCG00001440 mRNA upstream 72166 3904477 ~ 3914556 (+) True AMCG00001440
AMCG00001441 mRNA upstream 91813 3888242 ~ 3894909 (+) True AMCG00001441
AMCG00001437 mRNA upstream 214987 3766101 ~ 3771735 (+) True AMCG00001437
AMCG00001436 mRNA upstream 227639 3753386 ~ 3759083 (+) False AMCG00001436
AMCG00001438 mRNA upstream 245323 3676483 ~ 3741399 (+) True AMCG00001438
AMCG00001433 mRNA downstream 9288 4023170 ~ 4023910 (+) True AMCG00001433
AMCG00001430 mRNA downstream 31474 4045356 ~ 4062333 (+) True AMCG00001430
AMCG00001431 mRNA downstream 69156 4083038 ~ 4095370 (+) True AMCG00001431
AMCG00001432 mRNA downstream 98188 4112070 ~ 4121193 (+) True AMCG00001432
AMCG00001435 mRNA downstream 122294 4136176 ~ 4153348 (+) True AMCG00001435
TU198688 other upstream 105943 3875209 ~ 3880779 (+) True G157781
TU198685 other upstream 110449 3875209 ~ 3876273 (+) False G157781
TU198192 other upstream 1985794 1971881 ~ 2000928 (+) True G157369
TU197970 other upstream 3397422 587975 ~ 589300 (+) True G157196
TU198750 other downstream 39115 4052997 ~ 4062290 (+) False AMCG00001430
TU199079 other downstream 1367808 5381690 ~ 5383064 (+) True AMCG00001480
TU199165 other downstream 1583375 5597257 ~ 5622676 (+) True AMCG00001486
TU199229 other downstream 1856837 5870719 ~ 5871150 (+) False AMCG00001489
TU199235 other downstream 1884353 5898235 ~ 5900998 (+) True AMCG00001493

Expression Profile