RNA id: AMCG00001430


Basic Information

Item Value
RNA id AMCG00001430
length 6457
RNA type mRNA
GC content 0.44
exon number 6
gene id AMCG00001430
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 4045356 ~ 4062333 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTGCATTGAGCCGCGGTATGTGCGCCGTCTCCGTCAAGCTTTTCACAATGGGTGCTGATGATCCAGTGAGGTCAGCCAGCATTCCCCAGGCTAGGGACTGGCACTCTGACAGTAGCGTTTGGCTCCCCTCCTCCCCTGTCGAGACCCGTACCCCTGTGCTGAAATGCAAAGTCTCAGAGCAGCTGTTCAAAGCCCTAACCCTCTCCGACTGCAGCGCATATGAGGGCTGCTGTCGTCTGTTGCAGCAGCTGCAGCCTGGCCCTGATCCCGTCTTCTCTCATCTCTTCCTGCAGGACACATTAAAGCCTGCCTTCACAGTGGCCAGTCTGCCCggcaccaccaccaccgcccccaccacctccaccaccatGCAGGTCACCAGCGGCCCGTCCTTCCCAATCACCAACTACCTGGCACCTGTCTCGGCCAGCGCCAACACCAACAGCATCACCAGCGCCAACGGTACCGTGCTCAAGACCACGGGCCCCTCCGGGAGTGTCATGCAGCTGCCTGGAGGCTTCACCTTCATGTCAGGTGGAGCGATGCCACAGCAGCTGCAGGCGATCCAGGTGCACCccaccacacagcacagcccGGCCAGCTCTAGTGACAGCACCCCCGAGATGTCCCAGGCCTCCACCAGCTCTGCAGTAAGCCTCCCTGCCACCATCGTCACCTCTTCTGTGCCCACCTCCATGGCGGGTCACATGATGTACCCCAGCCCCCACGCGGTGATGTATGCCTCCACGCCCACCCTGGCAGATGGCGGGCTGGCCGTGCTCAACGCCTTCTCTCAGGCCCCCTCCGCCATGCAGGTGTCCCACACGCAGGGCCAGGATCAAGgTGGAGTCCCTCAGGTGTTCCTCACAGGGCCTCCAGGAACAGTACAGATCCCCGTCTCCGCAGTGCAGCTACACCCAATGGTGATTGGCCAGCAGTCcggtagcagcagcagtaaccTGACAGAGCTACAGGTAGTCAACTTGGAAGCCCCCCACAATGCCAAGAGCgactgacagacacacggaTACACAGACATCAAGGCCAGGAAGCGCAGACATAACTTTATAGAGACTGCCACGACTATTTATTGATGCCTTTTAGCAGCATATATacgaaaatgtatatatcaataTGGATGTGCACTCCCTAATATATACACTTGGGGGTGCATgtgcatatttacattttcacacaccCGGTATACATATGAAAcgtatgtatatttgtgtgtgtgtgtgtgtggatacgCACACGTATGCACACACACCTCAATATAGGAAGAGACAAGGTATTGTCTCCGTGTCCTTGGATCCTATTCTCATATAACTGAGAGTGtcgtattgtgtgtgtgtatttttatagtgACAACGTTACTGCAACATGCGCACATTGCAGGTGCTGCGGCTTTTCACTTCAGCCAAAGAGACattaatttgtgtgtatttgggTGGGGGGCGGTGGGGGTAAGGGAACCAGGgagatctgaaaatgtacataatactttttttattttgagaaaagaGAAATGAACTATTTTTAGCCTGTTTGTGCAATGGCAtgtggctgtttttgttttttttaatatacattagaGAGAGGGAGCTAGGGCTTTTTTTCTAGGTAGAAGTGGGCAAAAGCCCTGTAATACATTGAACCATGTTGAGAGAATCCAGTGCCAAACCATTAGTGACCCAACAGGGCTGATTTGCTTCACACAGAAGAGTTCTTGTTTAACTGCTTGAGGAGTTCCCCCTGTTGGTGATCAGACAGTAATGCAGACCGCATGTATGTGGGGCAATGTGCAGGCCAGCACAGGTCTCTCTCAGACCAACCATTGACTGCATTTTATAGTTTGTTCCATTTTTAATTAGCTTATTCTACACTGTATGTATCCTCCACTGGGTGTTCCCTATGCTTTGCCGACACTGTACTACAGCTTAGTTACCAAACTCCTAGGGTCCGAAATATCGAAATTGTGTGTCAACTACcctactttttaattaattaattgtgcgAGAAGCACAACAGACATGGATTTAGAAGGATAATAAAGGCATCCCATCTGTAACTGCTGGTCTGTGATAAATGATCCCTTTATTATGATGAGCAACATATGGCCCAAAGATTGAGCTGAACTACCAgagcattattttgattttagcATTTAAGGAAAAAGTccactgtttattttcagtttactttcaaaactgaaaagctAAAATCTTTGGTTGATCTGTGTATGACGTTGCGGCTGTGGCACCCGCATCACAGCCAGAGCTGAGCTGTGCAATCATCAGTCCATCTAAGAACAAGATTTAGAAACTGTATAGTGCGTGTCTCCTGATTTGCTGATGTGTTCTGAAGCTTTGCAAAATCACTTAGGTtatctttcctgttttttttccttgtaaCCCTTTTTTCAGGGAGATGAGtacagagagatgcatctgccaaataaaaacaaaaatgcttctTCCACTCCCACCTTCCCTTCTGatggttatatatttatttacgaGAGATGACACCACATGGCAGCTTTTTCTCCTTGGTTAGTCGTGTTACGTCGTTTTTCTCTTGTAGTTTGTTTCTGAATCTGTTGCAGTCTGTGGCAGGATGTCTGTATTTCTCCTTCATTATTCTACTGTGTTGATTGCTTTTAAGATTTCTTTAGATCAGTCACTGTAGTTTGACTGAATTCAGGAGGTGTCTtgacaaaaactgaacaaaattcAAAAGAACCAAAGTGGGTGTTTTTGACTTTAACCACACATTTCTCAAGGTTTTAGCTGGAAGTCTGCGGTAGACAGATATTCTCTTctaactgtaaaaataattgcGAGAAGGCAGTGTGTGCAGCCAGTCAAGCAGAAAATGCCCGGTCCCCCTGTATGATGTCACCCATTCGATTTATGACACTGCCATAGGCATCCATGGTAACTGTCCCTAAATAGCTGGAGCATTGATCAAAGCATCTGATCAAGGATCTGATGCCCTTTCTCCTCTTTTAAGCAGACTTTCTCCTCCTTGATCTCCAGTTCTAACTCAACTGGATCAACGCCCCGAACACACTCTGGAATAAGGCTCCGTTCCCCCGTGTGCTTCAGTCACGCAAGCCTGGTGAAGAACAGCCATTTCCCATAACGAGCGAAGGCTTGACATTGAACTTGTCTAACATTTGCAGACTAACGCTTTTTTGGATTgattgaatttgaaaaacaaaaccaatttgATTTTAGAAATACTGTAGATGCAGTGACTTAGATTGCACTTGCTGAGCTTTTGTTCTTCCAAATTCTCAAATATAACGGTTTGCAGAAGAAAGCAATTTGGCAAGAGGAGGCGGGAGTGGAAGAGCCTATAATATATGTGCATaccctatttaaaataaatcggTTCTGATCAGTATACAATCATACTGGGAGACGCACTGCGCCCAAGGAAGCCCCCTTCCCCAGTTCTATATATTAGAGAAATGCTCAGGGTGCAGCTGACGGAGCCCCAGTCTCCCAAAGCAGTCGCTAGTAAATGAACCGCTTCTCAATTTATCAGAGCTATCGGCCAAAACGTTCAGTCAGTCTTTCCTGTAAACGCAGATGTGCCATTTCCTGAGCTTGTGGGACTGACCCAGGCTTTTCCATTCCAGCAGATTGCAGGCTCACAAAAGGCCTCCCACTATTCAAACATCAATGGTCCTGGACCCCAGCCCCCCAGTCTAAATAAATACCAATCAGTAAtgtttttccagttattttctttcacacactGCAGCTCTTGCCCAGCCACGTGTTCCTGCTGTCCAGTTATAGTCTTGCATGTTTAGTTCCCTTTCATCCACTTCCTGCTCACAAGAAAGTACAACAGAGACCAGGACTCTTGACTTTGCTATGACCATGATCAAAggttttgtttataatattttgttaatatgtaCTGTAATATTTCAAAGTGCTTAACATGTGCATTTAAAGGGAAAGGGAGGAGTGGATCagatatttgaaaatgtgaatacCTCCCAGCTTGGTTGTTTGAGGATTTCCAATTACTTGGTTTTATGATGTCCTTTTAGGCTGCAATTTGTTTGAAAAGTTTTTCAGTATAAATGAAAATCTCACACCCAAGAAAGGTGAAGTTTTATGCACATTTAATATTGGCGTAGATTCTCATTACTTTATTTCTGATTACTTTTCAAGAAGAATAaagtggaaatatatatacaatatgatctgtcaaaacattttcacattggaTATCTCAAAcacacattattcaattatttaatggaaaaaaagaatatatgAATAGATTACACACCACATAGGTTTCCCGAATTGCATTTTCGCCATTGCAGAAACCTTGAACTCTGTCGCCAGTTTTGCAATGACTACAAATGGCTCCAGATCTGTGACGCTGGCTTCTGAAAGTCAGGTTTGGAGACCCACCCGCGGCCTCTCCACAGAGCTGTGATcgctaataaataaatcccgTTGTAGGTATTAATgtttagaaatatttaattcagcTCTCTCTTGCcagaaggtcaaaggtcaatgTGGACAGttggcctttttttattttattttttaaactctgGTACATTTATGGTTGTCCTTTTTTTGCCTTGTTGTATTTTATCTGTGATGGGTCCTTTCCCTCAGgaattgaaacattttgttaatacCGTACCTGGGAGATGCCATCTGCTGCTGTTTGGTCATCCCCTGTTGGCGAAATAGGGGTGGGAGGGATGCTGTTGAAGGGATTGGGGCTGAAAGGGAATGTTGGACAAGCGAACACCAGCGCTTTCTCTGTCTAAAATGCTCAGTGCGTTGGTCAGCCAGTGATGATCTGTGGCTTCTGGTTCCACCTGGAGCGAGTTCAAGATGACTTATGAACTTTGACATTTGCTTCCCAGAAATGGGGCAAGCAGTCCTTTGACCCGTTGGGTGACCCGGCAAGCAGCTACTGGGTGACCCATTGTAAATGGGAGGGAATGAAGGCCAGGTTTACCCATAGGCTCACGAAAAGCAAATTCATCTTCAAAAAACAATGGCAGAGTATGTAGATTGTTTCAATTCAGTGAGTTCTTAATGTCTGAAATGGCTGACCCAAGGGCACATGACAGACTGGTTCTTTGGCCGAAAGCATGGCACCCCCTCCACTGATATTTCTGCTGACCCAGACCTCAGTGTGACGTTGATCCTTTGCATCATGGTTTCTAGAACGTGACACACTGGCTTCACAACACGGTTTTCTGTAACTCTTAACAGACCATTGAGAAATGGTCCCCTCCATTCTGTGCTCACTAGAGTCATGCTCTGACTTCGAATGTAGGGGCTCTGGCTGGCGGCCCACAGTCAGGCCAGCCAGTGGGATTGGGAGGACAGGCGCCAGGCCAAACTCGTCGAATCTGTAGCACAGCGGTGCCTTTCTCACTGTGCCAGCTGTGCTTCCTGTGCAGGATACCTGGAACGAAGAGGCATTCACATCAGAACAGCTACTGTAGTTTTTATACTAGGGAAATGAGAGAAGAAATCCTCAAAccgaacaaaacaaacaaaagccttgaaatagtaaaataaaaaatatttttctaaatgtttgattttcagTATTTATGTACTACACATGacgacaaagaaaaagaaaagactgcgtTCTCGATCTGTAGTTTTCTGTGTGTGGCTTGTTTTCTCATGTTCCCTTGCGGGTGGAGTTGGgcacacttctgtttttcctttcttctccaGCCATAGAAGTCAAGGTTTAGGCTGCTTCAATGTGCTGATccttgtgtctttttgttttatctaaGGAAATCTCGCATTTTCCTGGATCAGTCACTTTTATTCTAgggctttattttgttttcccctgaCGCACATgcctttgtatttttatttaataaatatattaaaatggacTTGAAGTGGAGGCATTAAAAACACTgatgacaatgttttatttagacttgagaagaaaaaaacaactttaaaattaTCACAATCCTAGTGTTCAGCTAATGGACAAAGGCTGAAAATGGTATTTTCTAATGTCACTTGTCCcaatttcttttattttgtgtgtgacaAATATcgaggaaataaaaacattctccACCAAGCACTGAGTTTGATAAGctttttgaaagctgtttttaaattataatttagttccACACGCCAAGCAAACGACATGGTATAAAccttgacttttttttgtaactatGAAAATAGAATTACGGATTGTACACCAGATCTCTTGATATGATATGTGATTAGATTattctaaaattattattattttattttttttggtagtttgtttttattaacttcCAGAGTTTTGTCTGCGGAGTTTATGTATGTAACACGGTAACTCTGTACAGAGATTtcttttgtataaaaaaaataaaaaataaaaaaagcttcaataaatgtatcatttgtG

Function

GO: NA

KEGG:

id description
K04378 SRF; serum response factor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198740 lncRNA upstream 22108 4022797 ~ 4023248 (+) False AMCG00001433
TU198690 lncRNA upstream 128283 3881842 ~ 3917073 (+) False G157783
TU198691 lncRNA upstream 128283 3886798 ~ 3917073 (+) True G157783
TU198626 lncRNA upstream 279994 3748554 ~ 3765362 (+) True AMCG00001436
TU198555 lncRNA upstream 552187 3489063 ~ 3493169 (+) True G157668
TU198757 lncRNA downstream 4755 4067088 ~ 4067627 (+) True G157834
TU198914 lncRNA downstream 573031 4635364 ~ 4652000 (+) False AMCG00001457
TU198915 lncRNA downstream 634221 4696554 ~ 4702861 (+) True G157966
TU198925 lncRNA downstream 651562 4713895 ~ 4714160 (+) True G157975
TU198941 lncRNA downstream 810362 4872695 ~ 4875144 (+) True G157985
AMCG00001433 mRNA upstream 21446 4023170 ~ 4023910 (+) True AMCG00001433
AMCG00001429 mRNA upstream 31474 3986722 ~ 4013882 (+) True AMCG00001429
AMCG00001440 mRNA upstream 130800 3904477 ~ 3914556 (+) True AMCG00001440
AMCG00001441 mRNA upstream 150447 3888242 ~ 3894909 (+) True AMCG00001441
AMCG00001437 mRNA upstream 273621 3766101 ~ 3771735 (+) True AMCG00001437
AMCG00001431 mRNA downstream 20705 4083038 ~ 4095370 (+) True AMCG00001431
AMCG00001432 mRNA downstream 49737 4112070 ~ 4121193 (+) True AMCG00001432
AMCG00001435 mRNA downstream 73843 4136176 ~ 4153348 (+) True AMCG00001435
AMCG00001434 mRNA downstream 100340 4162673 ~ 4166553 (+) True AMCG00001434
AMCG00001446 mRNA downstream 115968 4178301 ~ 4204224 (+) True AMCG00001446
TU198688 other upstream 164577 3875209 ~ 3880779 (+) True G157781
TU198685 other upstream 169083 3875209 ~ 3876273 (+) False G157781
TU198192 other upstream 2044428 1971881 ~ 2000928 (+) True G157369
TU197970 other upstream 3456056 587975 ~ 589300 (+) True G157196
TU199079 other downstream 1319357 5381690 ~ 5383064 (+) True AMCG00001480
TU199165 other downstream 1534924 5597257 ~ 5622676 (+) True AMCG00001486
TU199229 other downstream 1808386 5870719 ~ 5871150 (+) False AMCG00001489
TU199235 other downstream 1835902 5898235 ~ 5900998 (+) True AMCG00001493
TU199345 other downstream 2331770 6394103 ~ 6395960 (+) True AMCG00001509

Expression Profile