RNA id: AMCG00001431


Basic Information

Item Value
RNA id AMCG00001431
length 1468
RNA type mRNA
GC content 0.49
exon number 11
gene id AMCG00001431
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 4083038 ~ 4095370 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GATGCCAGCCTACAATAACAGCTTGTTTTTTGCGGCTTTCTTCGTGTTGTATATTGTCATCAACACCTACATCTTCATGTACGTATTCCTGGCTGTTGTCTACaacaactacaagaaacatctgaagGAAGAAGTGAGACAAGTGGTGAGGGCGAAGAGAGACAAGATGGTGCGGGCCTTCGTGGTGCTGCAGGAGAGCCGGGGGGGGCAACCGGTCGTTGCGCAGGAGGACTGGAACCAGCTGGTCAAGATGGTGCAGCCGGACATCAGCACCTCCCACCGGCAGCTGCTGTGGAGCGTGTGCAATGAGGACAAGAATGGATACATAGGGAAAGCTGCCTTTGTACAGCTGGCTGACCTCCTTAACATCCAGGTTATCACCCTGAAGTCTCGCATCCACCCCCTGCAAATTAGATTTCCACGGCTTTACAGCTCGGCGGCTAGCAGGCTGATCTGCCGCCTGGTGCGGCACAAGGGGTTCATCTACATCTACGACCTGGTGATTCTGGTGAACGCTGTGTTCATCGGCCTGGACGAGGAGAACCCACTGATCTCCAACGCGGAGTGGGTGTTCCTGGGACTGTACTTGCTGGAGATCCTGCTGAAGCTGTACACCTATGAGCCGCGCTCATTTTTTGCCAGACATGAGTTTTGGAACTGGTTTGacaccatcatcatcatttctGCTTTAGTTGCCACCATCGCCAACTCCGCAATGAAATCATCTGGTGGCTACACCAGCCGTCAAATCCTGGATATAGTCTTTATCCTAAGGGTCCTGAGGCTTATTCGCATCGTGGACAGTATCAAGAGgtttCGGGCTATTATCAATACCATTATAAAGATTGGCCCCACGATTATTACTTTTGGACAGCTCATAATTGTGGTTTATTACATCTTTGCTGTGATTGGTATGGAATCGTTCAAGGGAAAAATCACATTCTACGGCTTCAACTCGTCGGACCCTGCCAGCGCGTACTGTGGCAACCCACTCCTGAAAGACTCTGCGTTTGCAAGACACAACTACTGCAAGAACAACTTCAATGACATTGTTTCCTCATTCATCCTTCTCTTGGAGCTCACTGTTGTGAACCACATTTTAGTCGCATTCATTCTGGAAGCTTTTTTTGTGGAGTATACGTTAGAAAAGTGTGATCTACAGACTTCAATTGAGAAGAAGATACAGGAGCTGGAATTGGGAATTGAGCAAGATGAGCAGGATAAGGGCATTGCGGAAGACATGGAAACTCAGGAGAATGACCTTGGCCCTGCAGAAAACGTCAAAGGAAAGTCTTCTCTCATGTTCAGGATTGCATCAAAAAGATACAAGACTGTGGATACCCTGTTACAGAGGATATTTGAGGCCGATCTGGGCCCTGAGGATAACGGCTGCAGTTTGGACGAGTGTGGAGAGGATCCTGACAATCCTTTGTCTCCAGGCTTCCAGAACCCAACCTTTGACAgcata

Function

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005216 ion channel activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198757 lncRNA upstream 15411 4067088 ~ 4067627 (+) True G157834
TU198740 lncRNA upstream 59790 4022797 ~ 4023248 (+) False AMCG00001433
TU198690 lncRNA upstream 165965 3881842 ~ 3917073 (+) False G157783
TU198691 lncRNA upstream 165965 3886798 ~ 3917073 (+) True G157783
TU198626 lncRNA upstream 317676 3748554 ~ 3765362 (+) True AMCG00001436
TU198914 lncRNA downstream 539994 4635364 ~ 4652000 (+) False AMCG00001457
TU198915 lncRNA downstream 601184 4696554 ~ 4702861 (+) True G157966
TU198925 lncRNA downstream 618525 4713895 ~ 4714160 (+) True G157975
TU198941 lncRNA downstream 777325 4872695 ~ 4875144 (+) True G157985
TU198946 lncRNA downstream 777325 4872695 ~ 4875144 (+) False G157985
AMCG00001430 mRNA upstream 20705 4045356 ~ 4062333 (+) True AMCG00001430
AMCG00001433 mRNA upstream 59128 4023170 ~ 4023910 (+) True AMCG00001433
AMCG00001429 mRNA upstream 69156 3986722 ~ 4013882 (+) True AMCG00001429
AMCG00001440 mRNA upstream 168482 3904477 ~ 3914556 (+) True AMCG00001440
AMCG00001441 mRNA upstream 188129 3888242 ~ 3894909 (+) True AMCG00001441
AMCG00001432 mRNA downstream 16700 4112070 ~ 4121193 (+) True AMCG00001432
AMCG00001435 mRNA downstream 40806 4136176 ~ 4153348 (+) True AMCG00001435
AMCG00001434 mRNA downstream 67303 4162673 ~ 4166553 (+) True AMCG00001434
AMCG00001446 mRNA downstream 82931 4178301 ~ 4204224 (+) True AMCG00001446
AMCG00001447 mRNA downstream 135232 4230602 ~ 4242177 (+) True AMCG00001447
TU198750 other upstream 20748 4052997 ~ 4062290 (+) False AMCG00001430
TU198688 other upstream 202259 3875209 ~ 3880779 (+) True G157781
TU198685 other upstream 206765 3875209 ~ 3876273 (+) False G157781
TU198192 other upstream 2082110 1971881 ~ 2000928 (+) True G157369
TU197970 other upstream 3493738 587975 ~ 589300 (+) True G157196
TU199079 other downstream 1286320 5381690 ~ 5383064 (+) True AMCG00001480
TU199165 other downstream 1501887 5597257 ~ 5622676 (+) True AMCG00001486
TU199229 other downstream 1775349 5870719 ~ 5871150 (+) False AMCG00001489
TU199235 other downstream 1802865 5898235 ~ 5900998 (+) True AMCG00001493
TU199345 other downstream 2298733 6394103 ~ 6395960 (+) True AMCG00001509

Expression Profile