RNA id: AMCG00001439


Basic Information

Item Value
RNA id AMCG00001439
length 4378
RNA type mRNA
GC content 0.54
exon number 19
gene id AMCG00001439
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 3608315 ~ 3648819 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCGGAGCCCAGTCCAGCTCCGCCCTCACTCCGTAGCCCCTCtgcttgggggaaaaaaatattgttggtTCTTCGGCGCAGAAAGTGGGACAGCTCAGGGTGTGCAACTGAATTCGCATCCGAGGAGGTTTTACACAACTTTCCTGTCAAGTTTGAGTCCTGTGCCGTGTTGGCGATGGGTTTACAACGACCGAGCTGGTTCATCTGGATGAGCCTGCTGTCGCTAGCGGGGCCCGTCCGCAGCCTGAGCCGCAGGGAGCTCTTCCAGCACGGCGGGGCGGCGGGGGACCGGGTCCTGGCTGCCGGGGACGACGCCACCCAAGAGCTCGCCCTGGACACACCGCTGCATTTCTTCGACGGCAAATTCAACAGCGTCTATATTAACACCAATGGGTTCATTGCCACCAAGCAGCCTGAGGAGGAGAGCAGTCTTTTGACTAGTTTTCCACCAAGTTTTGGCACCATCGCATTGTTTCTGGCAGATCTGGACACCAGCGACGGGGTTGGGAAAGTGTACCTGCGTCAGGACTCCAGCCCAGACACTCTGCAGCTGGCCGCACAGCACATTAGCAGGGCCTTCCCCGAGGATGACGAGTTCATCCCCACACATGCTGTCGTGGTCACCTGGCAGGACGTGGCAGCCTATCAGGAGCCCAGGAGAGGCGATCAACTGGACAACAAGaaaaacacattccagGTGGTATTGGCATCTGGAGACAAGTCTTCCTATGCCATTTTGCTATATCCAAGGGATGGACTGCACTTCACTTCCACTCGACCCAAAGGAGCTGATGCAGAGCAACCTGCCAGGGCTGCCTTCAGCAAAGGACTGGAGAAGTACTTAATCTGGGGAACTCGACAGGGGCCGGTCTACTCCATCACCTCTGACAATGAAGACTCTATAAGAGAGCTCTTTGAGCACACCAATTCCGGCAAGCGAGGGGTGTGGGTGTACGAGATCGGGACCTCTCCGTACTTCAGTGCTGTGGCTCCGGGGGAAGTGACTGGGATACCCGCCGAAGCCCCTCGGGAGAAGAGCCACGGGGGCTATGATGATGAGGCCCCTGAGCGGGTTGTGAACCCAGGGTATGGGCGTGAGGGGCAGCAGCAAGTAGTGGAATACCCGCCCTATGAGCCTTACCCCCCACAGCAGCCAGCGGAGGAGCAGCGCCCTGCAGTGTACGAGGAGCCCGAGCCAAATCCTGGGCAGGAAGTCACTGGAGACCACCTTCCAGTTGAGCCCTATGCAGAGCCCATTCCCATCCAGCCAGTCCAGTTTGAGCCGCCTGTGTACCCCCCCGACGGTCACGTCCAGCAGCCACTGTACCCACCAGAAGACCGCAGTGTTGTCATTGTGGACGGAGACCTTGACATAGACGCCAACATTTTTTCCTACAACTCAGACACATGTGCCAACAGCCGACAGAAGTGCTCCATCTTTGCCGACTGCAGGGACTACCCCAATGGCTACTGTTGTCACTGTAGGCCTGGTTACTATGGCAATGGCAAGCAGTGCTTGGCAGAGGGGAAACCTCAGAGGATGAATGGGAAGGTGAGCGGTCGTGTGTACGTGGGCAGCTCTCCGGTCCCCATCGAGTTCAACGGCAACGACCTGCACTCCTACGTGGTGGCCAACGATGGCCGGGCCTACGTGGCCATCAGCACCATCCCCCAGAGCCTGGGCCCGGCCCTGCTGCCGCTCTCCTCCCTTGGAGGTGTCATCGGCTGGGCCTTTGCCCTGGAGCAACCAGGCTACGAAAACGGCTTCAGCATCATTGGAGGGGAGTTTACAAGGCAGGCTGAGGTGATCTTCCTTCCTGGGAATGAGAGGCTGAGCATCAAGCAGGAGTTCAAGGGCATCGATGAGCACGAGCACCTAGTGGTCAGCACTGAGCTGGAGGGGAGACTACCCGACATCCAGGAGGGCTCCACTGTGCAGATTGAGCCCTACTCAGAGATCTACCATTACAGCAGCAACATGatcacctcctcctccacccgGAGTTATACCATCACTCTGAAGGACGGCAACACTCAGACCAGGTCTTACCAGTGGAGGCAGACCATCACGTTCCAGGGCTGCTCTCATGACGAGGCCACCAGAGCCATCCCCTCCACACAGCAGCTCAGCGTGAGCCAGATCTTCGTGATGTACGACTCTGGGAACAACCTGATCCGTTACGCCATGAGCAACAAGATCGGATCTCTCCACGGGGATGAGGGGGAAGAGAACGCCTGCTTCACTGGGACACACCGCTGCGACACCAACGCTGTCTGCCGCGCAGGCCAGGGCAACCAGTTCACCTGCGAGTGCGCCTCCGGATTCCGTGGAGACGGGCGCACGTGTTACGACATTGATGAGTGCAGGGAGACACCGCAAAGCTGTGGGCACAACGCTGTCTGCAACAATCAGCCTGGCACTTTCCGCTGCGAGTGTGTCGACGGCTATCAGTTTGGCAGCGATGGGCAGACCTGTGTCGAGGTGGACCGGCCGATTGACCACTGCCAGGCTGGCACGCACGAATGCGACATCGCAGAGCGGGCACAGTGTAGCTACACTGGAGGGTCCTCCTACATCTGCTCCTGTCTGCCCGGCTTCGTGGGAGATGGCAGCACCTGTCGGGATATTGACGAGTGTCAGCCAAGCAGGTGTCACCAGGAAGCATTTTGTTACAACACTCAGGGGTCATTCACATGCCGCTGTAGGTCCGGCTTCTACGGGGACGGATTCCAGTGCAACGCAGAAGGATCAGGCATTGACCAGGCTGTCCGACCCACCCCTGTGGGGCCCACCACCAGGCCTGATGTCCATCCGCTGCCTCCTGGCACCCACCTGCTCTTTGCCCAGAGTGGGAAGATCGAGTACGTGCCTCTGGAGGGCCACAACATGAAGAAGGTCGAAGCCAAGGCTGTGCTACACCTTCCTGACAGGGTGGTGATCGGAGTGGCCTATGACTGTGTGGAGAAGATGGTGTACTGGACAGACATCACTGGTCCAGCCATCAGCAAGGCCAACCTGCAGGGAGGGGAACCCATCCCTGTCATCAGAACAGATCTGGGAAGTCCTGAGGGATTAGCTGTTGACCACATTGGGCGCACACTGTTCTggacagactccatgagggacAAGATTGAGGTGGCCAAGCTGGATGGCAGTCAGAGGCGTGTGTTGATCGACACTGACCTGGTCAATCCGCGAGCCATCATCGCTGACCCTATCAAGGGACACCTCTACTGGGCCGACTGGAACAGAGACGCCCCTAAGATTGAAACATCATACATGGACGGCACCAACCGGAGGATTCTGGTGAAGGATGACCTGGGGTTGCCCAATGGCTTGACCTATGACCAACACTCCTCCCTGCTGTGCTGGGCCGATGCAGGTACACGAAGAGTGGAGTGTATGAACCCCAATCAGACGGGCCGCAGGAAAGTCCTGGAGGGAATCCAGTACCCCTTTGGCATCACAACGTACGGGAGAAACTTGTACTACACAGACTGGAGGAGggatGCGATAATTTCTGCCGATCGCACCGTGGGCCGAGAGAATGATGAGTTCCAGCCTCAGAAACGCTCCCGGCTTTATGGAATCACCACTGCCTACTCCCAGTGCCTCCCAgGGCAAAACTACTGCACTGTCAACAATGGAGGTTGCACCCACTTGTGCCTAGCAATGCCTACAGGCCGATCCTGTCTGTGCCCCGACAACGCAGTGGGAGTGGGCTGTGTGGAGAGAGATGGCAGGTATTAGAGTGAGGGGGTAAAAAAAAGCAGACCAGGTTTTGTTATCGGGGGGACTATCTGTCCATTTCCTGATTTCTACCCACTGGTGCAGAAAGAAACTTCTGCCACTATAGCTACTCAACAAAGCACTGAGCACCAAAAGAGTCCAGTGTGTTTAGggttgtcattttttattttatttttttatcacccttttaaaatacattttatttttggttttcctgatttttttgttttgttttttgttttcattacaattattgtaaataaatatgttcaaggttttttttgttttttgttttttgcattgttttttcagtgGTGCTTTCAGTTTAATTGGAGTAAGATTTTCTTAAGTATCAGGTATTACTGTGAAGTTTACACTATAAGCAGAATAAAGTGGAGGTTGCAGGattgacaaacacagagacgCAAAATGGAGAGACGCAAAGAGTTTTAACGCCCCCCTTTTTGTCGGAGATCATCGAGCAAAGCATTTTGATGACTGAAGAAAAGAGTTTAGGAACCATGTATTGAAGTATTACACCATACCATGTTGATAGACTGTATACGAAGTTCATGTCAGAAACGTTTACATTCTGTACAGCTATCCAATAAAAAACGttaaaaccata

Function

GO: NA

KEGG:

id description
K06826 NID; nidogen (entactin)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198555 lncRNA upstream 115146 3489063 ~ 3493169 (+) True G157668
TU198517 lncRNA upstream 170652 3436345 ~ 3437663 (+) True G157640
TU198512 lncRNA upstream 201913 3405148 ~ 3406402 (+) True G157635
TU198509 lncRNA upstream 207060 3394245 ~ 3401255 (+) True G157632
TU198476 lncRNA upstream 288382 3316486 ~ 3319933 (+) True G157602
TU198626 lncRNA downstream 99735 3748554 ~ 3765362 (+) True AMCG00001436
TU198690 lncRNA downstream 233023 3881842 ~ 3917073 (+) False G157783
TU198691 lncRNA downstream 237979 3886798 ~ 3917073 (+) True G157783
TU198740 lncRNA downstream 373978 4022797 ~ 4023248 (+) False AMCG00001433
TU198757 lncRNA downstream 418269 4067088 ~ 4067627 (+) True G157834
AMCG00001421 mRNA upstream 20875 3564520 ~ 3587440 (+) True AMCG00001421
AMCG00001420 mRNA upstream 53735 3546872 ~ 3554580 (+) True AMCG00001420
AMCG00001422 mRNA upstream 77585 3523338 ~ 3530730 (+) True AMCG00001422
AMCG00001415 mRNA upstream 187883 3419404 ~ 3420432 (+) True AMCG00001415
AMCG00001410 mRNA upstream 686036 2921972 ~ 2922279 (+) True AMCG00001410
AMCG00001438 mRNA downstream 27664 3676483 ~ 3741399 (+) True AMCG00001438
AMCG00001436 mRNA downstream 104567 3753386 ~ 3759083 (+) False AMCG00001436
AMCG00001437 mRNA downstream 117282 3766101 ~ 3771735 (+) True AMCG00001437
AMCG00001441 mRNA downstream 239423 3888242 ~ 3894909 (+) True AMCG00001441
AMCG00001440 mRNA downstream 255658 3904477 ~ 3914556 (+) True AMCG00001440
TU198192 other upstream 1607387 1971881 ~ 2000928 (+) True G157369
TU197970 other upstream 3019015 587975 ~ 589300 (+) True G157196
TU198685 other downstream 226390 3875209 ~ 3876273 (+) False G157781
TU198688 other downstream 226390 3875209 ~ 3880779 (+) True G157781
TU198750 other downstream 404178 4052997 ~ 4062290 (+) False AMCG00001430
TU199079 other downstream 1732871 5381690 ~ 5383064 (+) True AMCG00001480
TU199165 other downstream 1948438 5597257 ~ 5622676 (+) True AMCG00001486

Expression Profile