RNA id: AMCG00001440



Basic Information


Item Value
RNA id AMCG00001440
length 1106
RNA type mRNA
GC content 0.53
exon number 6
gene id AMCG00001440
representative True

Chromosome Information


Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 3904477 ~ 3914556 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGATCCTGCTGGAAGCCGCTACTCGTCATGTGACTAGAGTGCGCTGGCTGTCAACAAAACCTGCGGGATCCCCGGGAATGGCACGCATCACATTCGAGGACCTCGCCGCGTTGGACGACGAACAgctggatgatgatgatgtcgCGCAGAACAATCCTGAGCCAATGGccgaggaggagcaggagagacTGTTTGCTCATTGGCAGGCTGTGGCCAGCACACACCAAGTATCCCTCCCACAAGagATGTCTGGTCCGATTCAGCAGATGACAAGACAAAACCAAGcacaagagcaagagcaagttCCTTATGTGCCGGTATCTCGGCATGAAAAGCTGGAGGAAGTGCAGTATGAGGAGAGGGTGTATCCAGCTGGAAAGTGGGCCTGTATCACCAAGGGAGAGGACATGTATGAGCAGAGCATTTCTATGGGCTTCATGAAACTCATGCGCTACATTTGCAAGGAGAATTCTGCAGGGCGCTACTTGGGAATGACCATTCCTGTCATGAATGAGATCCAGATGTTGCAGGATGGGAAGGGCTTCATGAAAGATATCTTGACCGCGTATTACCTTCCGGCAGAGTTCCAGGACGACCCCCCGGTGCCCACAGACTCTGAGATCGCCATTGTGCAGAGAGAGTCTATCCGAGTCCTCAGCAGGGTGTTCTACGGGACGACCACCGAGGAGACCATTTCCAGGCAGATCAGCTTGCTGTGGGAGCTGCTGGGGTCCACGGACGACTTCCACAGGGACGTCTACATGGTGGCAGTGTACCAGAACCCCGGTGTGCCCTGCCGGAGAAACGAGATCTGGTTTATCCGCCGCGACCCATAGAGGCCAGACAGGGCCCCAGATTGCACCTGAAACAAACTGGGCCCTGGGTTCCCTTGCACTATGTCTACCCTAACACAGATTTATTGCCTGTAtagacataaaaacaaaaatccaagaGTTCCCCATACCTGGTTTCCTTTGTGTGCCTAAATTGTCATTAGAATGTAGAGATCTGGTAGCTTGGAGATGCTTTTCCCTGacaatggggagagagagagagagagagagagagagagagagagagagagagagagagacacacacacaca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU198626 lncRNA upstream 139115 3748554 ~ 3765362 (+) True AMCG00001436
TU198555 lncRNA upstream 411308 3489063 ~ 3493169 (+) True G157668
TU198517 lncRNA upstream 466814 3436345 ~ 3437663 (+) True G157640
TU198512 lncRNA upstream 498075 3405148 ~ 3406402 (+) True G157635
TU198509 lncRNA upstream 503222 3394245 ~ 3401255 (+) True G157632
TU198740 lncRNA downstream 108241 4022797 ~ 4023248 (+) False AMCG00001433
TU198757 lncRNA downstream 152532 4067088 ~ 4067627 (+) True G157834
TU198914 lncRNA downstream 720808 4635364 ~ 4652000 (+) False AMCG00001457
TU198915 lncRNA downstream 781998 4696554 ~ 4702861 (+) True G157966
TU198925 lncRNA downstream 799339 4713895 ~ 4714160 (+) True G157975
AMCG00001441 mRNA upstream 9568 3888242 ~ 3894909 (+) True AMCG00001441
AMCG00001437 mRNA upstream 132742 3766101 ~ 3771735 (+) True AMCG00001437
AMCG00001436 mRNA upstream 145394 3753386 ~ 3759083 (+) False AMCG00001436
AMCG00001438 mRNA upstream 163078 3676483 ~ 3741399 (+) True AMCG00001438
AMCG00001439 mRNA upstream 255658 3608315 ~ 3648819 (+) True AMCG00001439
AMCG00001429 mRNA downstream 72166 3986722 ~ 4013882 (+) True AMCG00001429
AMCG00001433 mRNA downstream 108614 4023170 ~ 4023910 (+) True AMCG00001433
AMCG00001430 mRNA downstream 130800 4045356 ~ 4062333 (+) True AMCG00001430
AMCG00001431 mRNA downstream 168482 4083038 ~ 4095370 (+) True AMCG00001431
AMCG00001432 mRNA downstream 197514 4112070 ~ 4121193 (+) True AMCG00001432
TU198688 other upstream 23698 3875209 ~ 3880779 (+) True G157781
TU198685 other upstream 28204 3875209 ~ 3876273 (+) False G157781
TU198192 other upstream 1903549 1971881 ~ 2000928 (+) True G157369
TU197970 other upstream 3315177 587975 ~ 589300 (+) True G157196
TU198750 other downstream 138441 4052997 ~ 4062290 (+) False AMCG00001430
TU199079 other downstream 1467134 5381690 ~ 5383064 (+) True AMCG00001480
TU199165 other downstream 1682701 5597257 ~ 5622676 (+) True AMCG00001486
TU199229 other downstream 1956163 5870719 ~ 5871150 (+) False AMCG00001489
TU199235 other downstream 1983679 5898235 ~ 5900998 (+) True AMCG00001493

Expression Profile