RNA id: AMCG00001452


Basic Information

Item Value
RNA id AMCG00001452
length 372
RNA type mRNA
GC content 0.56
exon number 2
gene id AMCG00001452
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 4518304 ~ 4519128 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTGGCGTGAGCTGGAGGAGCTGTATAAGAGACTGAGGCACCCGTTCGTATGGAAAGACCACCTGGGCTATGTGCTGAGCTCTCCGGCCGAGGTGGGGACGGGGCTGAGAGCCAGTGTCCGGGTGGCACTGAAGCACATCCAGCACCACTGGCAGCTGGGCAACATCCTGGACAGACTGCGCCTGAGACTGGCCCACACAGGCTGTGCTGCCGGCAGTGTCTGTGAGGTTTTCAATGCACAAACCATTGGCTTCACTGAAGTAGAGCTGCTGCAGTTTCTTGTGGACGGTGTCAAACTCCTGATAGTCATGGACAAGACACTAGGCCAGCCAGACGGAACTATTGATCACCTAATCCCTGCTCACAAGTAA

Function

GO:

id name namespace
GO:0016772 transferase activity, transferring phosphorus-containing groups molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198757 lncRNA upstream 450677 4067088 ~ 4067627 (+) True G157834
TU198740 lncRNA upstream 495056 4022797 ~ 4023248 (+) False AMCG00001433
TU198690 lncRNA upstream 601231 3881842 ~ 3917073 (+) False G157783
TU198691 lncRNA upstream 601231 3886798 ~ 3917073 (+) True G157783
TU198626 lncRNA upstream 752942 3748554 ~ 3765362 (+) True AMCG00001436
TU198914 lncRNA downstream 116236 4635364 ~ 4652000 (+) False AMCG00001457
TU198915 lncRNA downstream 177426 4696554 ~ 4702861 (+) True G157966
TU198925 lncRNA downstream 194767 4713895 ~ 4714160 (+) True G157975
TU198941 lncRNA downstream 353567 4872695 ~ 4875144 (+) True G157985
TU198946 lncRNA downstream 353567 4872695 ~ 4875144 (+) False G157985
AMCG00001453 mRNA upstream 391 4512184 ~ 4517913 (+) True AMCG00001453
AMCG00001450 mRNA upstream 7448 4500349 ~ 4510856 (+) True AMCG00001450
AMCG00001451 mRNA upstream 22453 4489453 ~ 4495851 (+) True AMCG00001451
AMCG00001445 mRNA upstream 202355 4313938 ~ 4315949 (+) True AMCG00001445
AMCG00001448 mRNA upstream 236962 4259020 ~ 4281342 (+) True AMCG00001448
AMCG00001457 mRNA downstream 104339 4623467 ~ 4651947 (+) True AMCG00001457
AMCG00001463 mRNA downstream 251489 4770617 ~ 4779786 (+) True AMCG00001463
AMCG00001461 mRNA downstream 283044 4802172 ~ 4866884 (+) True AMCG00001461
AMCG00001462 mRNA downstream 349951 4869079 ~ 4870742 (+) True AMCG00001462
AMCG00001459 mRNA downstream 357020 4876148 ~ 4885603 (+) True AMCG00001459
TU198750 other upstream 456014 4052997 ~ 4062290 (+) False AMCG00001430
TU198688 other upstream 637525 3875209 ~ 3880779 (+) True G157781
TU198685 other upstream 642031 3875209 ~ 3876273 (+) False G157781
TU198192 other upstream 2517376 1971881 ~ 2000928 (+) True G157369
TU197970 other upstream 3929004 587975 ~ 589300 (+) True G157196
TU199079 other downstream 862562 5381690 ~ 5383064 (+) True AMCG00001480
TU199165 other downstream 1078129 5597257 ~ 5622676 (+) True AMCG00001486
TU199229 other downstream 1351591 5870719 ~ 5871150 (+) False AMCG00001489
TU199235 other downstream 1379107 5898235 ~ 5900998 (+) True AMCG00001493
TU199345 other downstream 1874975 6394103 ~ 6395960 (+) True AMCG00001509

Expression Profile