RNA id: AMCG00001459


Basic Information

Item Value
RNA id AMCG00001459
length 1800
RNA type mRNA
GC content 0.56
exon number 11
gene id AMCG00001459
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 4876148 ~ 4885603 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCAGGGACAGGTATACCGGGGGGATCCCCAACCTCATCATTCAGGGGGTCGCCAGCCCTGCCACCTATTATCACTCCATCCAACAGAGACTTTCTGGACACCTTGTATGCATACATAGACTGTGAGAAGAAGAGGTTAGGATGTCCTGAGAAGGGGCCGGACGAGCAACGATATGTCATTTACAGCTTTGTGTTTGAGAAGGTCATCGAGCATGTCTCTGCATACAAGAGCGTGTTGAGCATCATCAAGAAAGAGTACGATGACTGCATTGCTGCCATAAAGAAGAGCCACAGAAATGCCAGGGTCCGGCAAAACCAGCTGAAGGTCATTGCTGCTGAGCCCACAACTCTCATGCACTACCAGAGAAGAGCCACCCAGCTTTGGGAGAGGACCGAGATCATTCAGACAAACTCGGCTGAACTGAGGGCTCAAATTGAGAAGCTCAGAGACTCAAGAAGAAGGAAAAGCCCCTCACCGAAGGAGGAGGGCCCAGAAGTCAAACCCATTGGCCACATTCCAGGCCTGACATTTGAGGAGTCAATCAGCCCAGAGGCTCTGACCGAGCACCTGGAGTTCCTGGGGGGGAAGCGCAGGGAGCTACAACACAAGAAGAGCAGCCACTACGTCCCGGCACAGGTGAAGGCTGACTTGGACCGCAAGATGAGCCGCACCCTGGAGCGCAGAGATGAGCTGGCAGAGCAGAACACAAGACTGCGGCTCAGATACAAGCAAATTAAGGTGCTGTCTGGGGCTGTGCTTTCCTGGGAGAAATCGGATAGAAAGACTCCCCTGTTGGAGTTTGTCTCACCAATACTCCAACAGGCCTCAGACGTGAAAGcCTGTGATTCTTACCAAAGCATCAATTCAGTTGGATTTGAAGACGATGATCCGAGCAAGATCAAAGCATCTGAACTCTTAGCAGACTACATGGAACGCTTCCTGGAGCTCTTCGATGGAGGGCAATATGAGGCAGCTGCTTTCCATGCAGCCCGGTCCCCTCATGGAGCACTGAGGAACATGGAGACTATGGAGAAGTTCAgagGGATCACTGCGTACGAGGGAGAGCGTCCCCCTCTGCTGATGTTCTTCCAAGCCCTGATGATCTCTGTGGACGCGGTGAAAAATCCCCCCGGCGATGCCTTGTCTGTGGAGGCCGTGCGGTGCACCCTGCAGCACGGCTGTGTGGAGCTGGTCACACATTGGGTCACTCAGCACAGGCTGACCTACTCCGAGGCTCTGGCGGATGTCATCTTTGAGCATGGGCAGAGGACACCCCAGATCTCCAACACCTGCCTGGCTCTGGCCCAGATGGTGTATAGTGAGTGTGCCGTCCACAGGAAGGCCGTGTTGTGCATGTGCAGGCGGGGCATGATCAGCGGGGCCTTGGAATTCATCTACCAGAGCAAGACGTTCACCCTGGATGACTGTCTGTCCCTGCTGAGGGGCTGTCCCGGCATGGTGCTCCTACAGGCTCTGACCCAGGAGTACAGGGGCCGGCCGGCAGTGCTGTCCGTGGGCCTGgcagccctctctctcctgtcctctGACAGCAAGGACTTCGCCCTCCAGCTGCTGGAAAGGGTCTATGCCCGTGGGCGAAGTGTCCTGGCGAAGACGATCTTGGAAGACCTCATCTGCTCTCCTGAGGGATGGAGTGAGATCGCAGCCCAGTGCCGGGAGAATAACCTCACTCAGCTGGCCCAGGACATCATCGGCATCCTGTCGGCCCAGGCTGGAGTGGTGCTGCTCGACCCCGGCTCTGAGGATGCCAGGCTCATGGAGCATGTGCTCCTGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198941 lncRNA upstream 1004 4872695 ~ 4875144 (+) True G157985
TU198946 lncRNA upstream 1004 4872695 ~ 4875144 (+) False G157985
TU198925 lncRNA upstream 161988 4713895 ~ 4714160 (+) True G157975
TU198915 lncRNA upstream 173287 4696554 ~ 4702861 (+) True G157966
TU198914 lncRNA upstream 224148 4635364 ~ 4652000 (+) False AMCG00001457
TU198982 lncRNA downstream 2511 4888114 ~ 4888352 (+) True G158014
TU199069 lncRNA downstream 427465 5313068 ~ 5315236 (+) True G158089
TU199073 lncRNA downstream 480402 5366005 ~ 5367069 (+) False AMCG00001480
TU199086 lncRNA downstream 535868 5421471 ~ 5423092 (+) True G158104
TU199168 lncRNA downstream 708077 5593680 ~ 5622676 (+) False AMCG00001486
AMCG00001462 mRNA upstream 5406 4869079 ~ 4870742 (+) True AMCG00001462
AMCG00001461 mRNA upstream 9264 4802172 ~ 4866884 (+) True AMCG00001461
AMCG00001463 mRNA upstream 96362 4770617 ~ 4779786 (+) True AMCG00001463
AMCG00001457 mRNA upstream 224201 4623467 ~ 4651947 (+) True AMCG00001457
AMCG00001452 mRNA upstream 357020 4518304 ~ 4519128 (+) True AMCG00001452
AMCG00001460 mRNA downstream 29248 4914851 ~ 4939823 (+) True AMCG00001460
AMCG00001470 mRNA downstream 363771 5249374 ~ 5250444 (+) True AMCG00001470
AMCG00001480 mRNA downstream 481429 5367032 ~ 5382584 (+) False AMCG00001480
AMCG00001479 mRNA downstream 517622 5403225 ~ 5413536 (+) True AMCG00001479
AMCG00001478 mRNA downstream 580293 5465896 ~ 5468938 (+) True AMCG00001478
TU198750 other upstream 813858 4052997 ~ 4062290 (+) False AMCG00001430
TU198688 other upstream 995369 3875209 ~ 3880779 (+) True G157781
TU198685 other upstream 999875 3875209 ~ 3876273 (+) False G157781
TU198192 other upstream 2875220 1971881 ~ 2000928 (+) True G157369
TU197970 other upstream 4286848 587975 ~ 589300 (+) True G157196
TU199079 other downstream 496087 5381690 ~ 5383064 (+) True AMCG00001480
TU199165 other downstream 711654 5597257 ~ 5622676 (+) True AMCG00001486
TU199229 other downstream 985116 5870719 ~ 5871150 (+) False AMCG00001489
TU199235 other downstream 1012632 5898235 ~ 5900998 (+) True AMCG00001493
TU199345 other downstream 1508500 6394103 ~ 6395960 (+) True AMCG00001509

Expression Profile