RNA id: AMCG00001460


Basic Information

Item Value
RNA id AMCG00001460
length 3816
RNA type mRNA
GC content 0.52
exon number 10
gene id AMCG00001460
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 4914851 ~ 4939823 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCGTACTTGTTCAgctcagcccagcccagccctaCGGCACCCAGACGCTCAGCCAAACTTAAGGTCGACTTTTCCAGGAAAGGTGGCGGGGATTTGGGGTATAAAATAACCAAGAAAAGCTGCTCCAAAACCAAGAAGCAAAGACATGGAAGACGCGCATATATCCTCCACGACCGCCCGCTCGGACGAGCATCAAGAAGACTACGAGCAGAGGGATCGGAACCAGCTGTTCGAGGAGGCGGCCGGGTATCTGCTGGGGGAGAACAACGAAGCCGAGCCTAGAAAAGTGCCAGAGGATGATATCTTGGACTTAACCGGCGGACCCCCGATGGATGATTTTTACTCTCGCAAACGGGAGGACCCCGTCCCAGACATCTGGTCGGACTCTCCCTCTTCTTTTAGCCTGGATCCCTCCAGCAACAAGCTCAAGGAGCCGCTGAAGCCGCCCTTCGCGGAGCCGGCGGAGACGAAGACAAAGGCGGGGGAGGTGGAAGACAAGATCCTTAAGCCAGAAACACCCAAGGCGGCCCCAAGGAGCCCAGCGAAGGAGGCGTCTCCCCCGGGTTCGTCATCACCATatgaacccatttttccttcttctgctCCATCTCAGCCTCTGGCGCAGTCCTTTGCAGAGGGCTTTGTGGCTATGCAAGAGCAACCACGCAGCACTCAACCACTAGATGAGAAGGAAGGCTCAGCTGTCTTATGGACTGTCCCTCCagtctcctctctgtctcctcttccttctcctgACTCTTTGGAAGACCTCTCTCTATCTGAAAGCCCCAACCAGGCCCCTTCTCTAGGTGCACCCTTTGGTTCTTGCTTGCCAGGTGATCCTGTTCAGACAGCTGTCCAGGAAATGCCTTTGAGTGAGGAGATGAAGAGGTCTGAATGTAAAACGGAGACCGATCATCCAGACGCCAAACTGAGCCTTGACCGTGATTACCAAAACCTCCAGGCTGGGTTAGACAAAGTCGACATGCAGGCCACTCCAGCTGTAGATGCTACCTTTCCTTCTCTGGGAAGTGACCAGTCCCTGAACTCCCAGCACGAAATGAACTTTGATCTCAGCCCAGGGGAGCTTGTGAGTGAACAGAAAGAGGCTCGGCATAAAGAGGAGGTCTCTTTGTCCCCTGAAAGTGTTCTGAGCATTTCTGGTAAGGCTGCCACGCTCGAATTTGGGTCACAGCAGGATCTAGTGAAGTCTGTAGTCTGTGAAGACAGTGGGGTTGCCTCTTCTCCTGATGAAAAGTTAGGGAGTTCAGTAGGTTCTCCTGAAGAGGAAAAAATCCTCCTTGACCAAGAAGGACTCATCAAAGGTACAGATCATCTTGGAGAATCCCAATTGGAAACTGCTGGATCTGCCCTGCCACAGGTGCCCCAGGTCCCAGAGCCTCCATCAGGAGATGCCACCCAACCTTTTATTTCATACGCCACGTTTGACCCTACAAACAACTTTGATACTTTACTCACTGACTTTCAGGACAGTGGCACAGCATTAGATGCATCTGAAAAGCTCTCGGCCTTAAAAGTGTCTAGTGGTGAAACTGAAAGTCAAGCACAAGTGAGCCATGAGATGAAGCCTGCTGCTCTTGAGACATCCCTCCCCAAAGCACCCTCACTAGAATTTTCTCCCATTGCCGATTCTAGCAGTGGGTTCCCAGAATGTGTTGAAACAGCCTCCGAAAGCAGTGCTGCCAAAATGTCAGAAAGCCCGACACCTGACTTGGTGCAAGATGCATATGACAATGATTCGCAAGTTCCAACTCCCACAAAGCCTAAAGGAGCAACTCCTGTAGATTTGGTTTTAATGACCTCTGATTCAGTCCAGGAACAGTCTGATCCTTCAATGCGTCTTCCTACATCTCCCAGAGTGTCTGAGACCTCTGCAGTACCACCTACTACACTaccagatatcttgaaatcgTCTCCTTTGAGTTCTGGCAAAGTTGATTCTGGATCATCTGAAGGATCTCCGGATTCCGAACAGAGCCCTATTCTGGAACTTCAGAGGGAGATGCCTGACCTGTCTGTAAAAACGGAGGCTGCCAAAccatttgtctttgatttggaCTCCAGGATTTCAGCTTTGATGGAATCCACTGAGAATGTTGCACCTAAAAAGGCAGAAGTGGAACATGCCTTTGGACAAACCTTAGATATGCCGCTTGGTTCTTTTGATCTTGTTAAGGAAGCTCAAACCACCACTGACCACAAAGACCAGATGGAGACAAATGAAGATGCAATGAGGTTTTCATGTCAAGATGCTCCTACATTTTTGGACAGACTTCAATCTCACAGCACTGAGCCAGCTATGAATGTAACTAGTCCTCCATCAAAAACCATGGTCCCTGAAGAATCTGATTCTGAAAGTCCCATGACAGATTCCCTATCCCCCGTCCTGGAAGCAATGGCAAAGAATCCAGCcagttttcaaattgaaattgagGGCAAATATCAGAAGGACAGCGACACGTCCTCAGTCCCTGTTGCCCATGATTTCCCGCAGAGTAGGGCTTATTTGGAAGAGCCGGAAGACGATGCAGAAGAAGCTTTTGACCAAGAAGTCTCCTCTGAAGAGTTTGAAATCATAGAGCGACCCCCTGCTGAACTGAAAGGCGTTATAGATGAGTTTCTGGAAACGCTGGATAATTCTAAATTCGCAAAGGCGTCAGAAGCTGGCACAGATGATGATGCGTCCCCGGGTTTCGGGCAGGATGAGTCGGCGCCAGAGATTGGAGAACTTCATGTAAGCCTGCAACAAAATGCGTATATGATTTTGACCGAGCCTGCTTCCAAGGCCCCAACACAAAAGCAGCCAGCCGAAATCGAGCCCCCAGTTGCCTTCTCGGAGCAGCTGAAGGAGGATGAAGCCCCAGCAGCTGTTTCAGCCTCTGCTTTCTCCCACGATGCCCCGGCCCGTTCAACTGTGGAAGAGATGGAGAAACTCGCTCCTCCTGCTCTGAAGACCGCAGAAGACAAGCCCCCCTGTGACACCCCACACCTCGATGTCCCTAAAGATGTGCAGTTAGCGAAACTGAGCACAGAAGCAGCGATCTGTGTAGCGGGCGAGTGGTCGGAAGGCCGGCGCTTAGATCGGGGCGTTGCGGCGTGCGGACCGCTAGAGGCCCGGGCAGGTCACTGCGCGCAGTCCGGCGGCTGCTCCGTGCGCTGCGACACCGACAGCATCAGGGACGGGGGGGTGAAGGGGACACAAAACAGACCTCTCTCCGGAGTGGTGGACCTCCTGTACTGGCGCGACATCAAGAAGACGGGCGTGGTTTTCGGGGCCAGCCTGTTCCTGCTCCTGTCCCTCACGGTGTGCAGCATCGTGAGCGTGTGCTCCTACATGGCCCTGGCCCTGCTGTCTGTCACCATCACCTTCAGGATATATAAGGGCGTCTTGCAGGCGGTGCAGAAGTCCGATGATGGACACCCATTCAAggcTTACCTCAACTCGGACGTGGCTCTGTCTGAGGACCTGGTGCACAAGTACAGCGATGTGGCCCTGTCTCACCTCAACTGTGGCCTGAAGGAGCTGCGGCGCCTCTTCCTGGTCGAGGACTTGGTGGACTCTCTGAAGTTTGCAGTGTTGATGTGGATTCTCACCTACGTTGGTGCCTTGTTCAACGGCTTGACTCTTCTCATTCTGGctctGATTGCTGTGTTCAGCGCCCCAGTTATTTATGAAAGGCACCagGCACAGATTGACCATTATGTAGGGCTGGTGAACAATCAAGTCAAAGACATCGTTGCTAAGGTCCAGGCGAAAGTCCCCGGCCTGAAGCGCAAACCGGAGTAAGGGGCCG

Function

GO: NA

KEGG:

id description
K20720 RTN4; reticulon-4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198982 lncRNA upstream 26499 4888114 ~ 4888352 (+) True G158014
TU198941 lncRNA upstream 39707 4872695 ~ 4875144 (+) True G157985
TU198946 lncRNA upstream 39707 4872695 ~ 4875144 (+) False G157985
TU198925 lncRNA upstream 200691 4713895 ~ 4714160 (+) True G157975
TU198915 lncRNA upstream 211990 4696554 ~ 4702861 (+) True G157966
TU199069 lncRNA downstream 373245 5313068 ~ 5315236 (+) True G158089
TU199073 lncRNA downstream 426182 5366005 ~ 5367069 (+) False AMCG00001480
TU199086 lncRNA downstream 481648 5421471 ~ 5423092 (+) True G158104
TU199168 lncRNA downstream 653857 5593680 ~ 5622676 (+) False AMCG00001486
TU199182 lncRNA downstream 768269 5708092 ~ 5734559 (+) True G158184
AMCG00001459 mRNA upstream 29248 4876148 ~ 4885603 (+) True AMCG00001459
AMCG00001462 mRNA upstream 44109 4869079 ~ 4870742 (+) True AMCG00001462
AMCG00001461 mRNA upstream 47967 4802172 ~ 4866884 (+) True AMCG00001461
AMCG00001463 mRNA upstream 135065 4770617 ~ 4779786 (+) True AMCG00001463
AMCG00001457 mRNA upstream 262904 4623467 ~ 4651947 (+) True AMCG00001457
AMCG00001470 mRNA downstream 309551 5249374 ~ 5250444 (+) True AMCG00001470
AMCG00001480 mRNA downstream 427209 5367032 ~ 5382584 (+) False AMCG00001480
AMCG00001479 mRNA downstream 463402 5403225 ~ 5413536 (+) True AMCG00001479
AMCG00001478 mRNA downstream 526073 5465896 ~ 5468938 (+) True AMCG00001478
AMCG00001475 mRNA downstream 541461 5481284 ~ 5486455 (+) True AMCG00001475
TU198750 other upstream 852561 4052997 ~ 4062290 (+) False AMCG00001430
TU198688 other upstream 1034072 3875209 ~ 3880779 (+) True G157781
TU198685 other upstream 1038578 3875209 ~ 3876273 (+) False G157781
TU198192 other upstream 2913923 1971881 ~ 2000928 (+) True G157369
TU197970 other upstream 4325551 587975 ~ 589300 (+) True G157196
TU199079 other downstream 441867 5381690 ~ 5383064 (+) True AMCG00001480
TU199165 other downstream 657434 5597257 ~ 5622676 (+) True AMCG00001486
TU199229 other downstream 930896 5870719 ~ 5871150 (+) False AMCG00001489
TU199235 other downstream 958412 5898235 ~ 5900998 (+) True AMCG00001493
TU199345 other downstream 1454280 6394103 ~ 6395960 (+) True AMCG00001509

Expression Profile