RNA id: AMCG00001462



Basic Information


Item Value
RNA id AMCG00001462
length 807
RNA type mRNA
GC content 0.50
exon number 5
gene id AMCG00001462
representative True

Chromosome Information


Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 4869079 ~ 4870742 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGACTACAAGCAGCCCGGAGACAATTCACCAAGTGGTCCACGGAGCCAGGGACTCCATGATCTACTACCTTTCGATAGGCTGGGTTCTGGAACACACCACTTTGTACGCCATTATCCCCGACCCCCATCTTCTGAAGCTGCCAATTGCGAAACTGGAAGAGACTGTGCATGTGATCAGAAATATTCCTGCTGTTGAAGAGGCCACGATCTTGCATTTTATGACACAACAGGTATGCAAACTGTTCATCAGGCAAGATGTCAGCACATGGAACACCAAAGTGAGGAAGAACATACAGGAGAGCGGCTTCTACCAGAAGCATTCACTGGACAGTGAATTGCTGGCTGGATTCAGAGAATACCTCCAGAATGACAGAGGTGTTCCCAATTGCAAACAGGAGAGTATCCACTTCTTCATGGAATCCAAGCCTTCTCTAGAGTTCATCCAAGACATAGAGGAGTGCAGGTCATACTTTGTGCAGCAGGAGAAAAACGGACAGTCACACCAGATGGCAAAGAACTACATGAAGAACCTGGACCAGCTGACCGTTCTCTACTACCCGGAGGCCCTGCTGATGCTTCAACACCTGCAACATGCCAGTGTCATGAAGAACCTGACAGTAATCAGCCAAGAGGGTCAGATTGAGCGTTACATAATTCACCAGGACTGGACCAAGAACCGTGTCGAGGCGGAAGCTGTAGTCTCGGTGTGGGTGCCTGTGGCCGAGACCCTAACCTCATTCCAGAGCCCAGACATTTTGCAGAAAGTGAAGTCCCAGAAGTGGAGGGGACTACGGTTCAGTACAGTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU198925 lncRNA upstream 154919 4713895 ~ 4714160 (+) True G157975
TU198915 lncRNA upstream 166218 4696554 ~ 4702861 (+) True G157966
TU198914 lncRNA upstream 217079 4635364 ~ 4652000 (+) False AMCG00001457
TU198757 lncRNA upstream 801452 4067088 ~ 4067627 (+) True G157834
TU198740 lncRNA upstream 845831 4022797 ~ 4023248 (+) False AMCG00001433
TU198941 lncRNA downstream 1953 4872695 ~ 4875144 (+) True G157985
TU198946 lncRNA downstream 1953 4872695 ~ 4875144 (+) False G157985
TU198982 lncRNA downstream 17372 4888114 ~ 4888352 (+) True G158014
TU199069 lncRNA downstream 442326 5313068 ~ 5315236 (+) True G158089
TU199073 lncRNA downstream 495263 5366005 ~ 5367069 (+) False AMCG00001480
AMCG00001461 mRNA upstream 2195 4802172 ~ 4866884 (+) True AMCG00001461
AMCG00001463 mRNA upstream 89293 4770617 ~ 4779786 (+) True AMCG00001463
AMCG00001457 mRNA upstream 217132 4623467 ~ 4651947 (+) True AMCG00001457
AMCG00001452 mRNA upstream 349951 4518304 ~ 4519128 (+) True AMCG00001452
AMCG00001453 mRNA upstream 351166 4512184 ~ 4517913 (+) True AMCG00001453
AMCG00001459 mRNA downstream 5406 4876148 ~ 4885603 (+) True AMCG00001459
AMCG00001460 mRNA downstream 44109 4914851 ~ 4939823 (+) True AMCG00001460
AMCG00001470 mRNA downstream 378632 5249374 ~ 5250444 (+) True AMCG00001470
AMCG00001480 mRNA downstream 496290 5367032 ~ 5382584 (+) False AMCG00001480
AMCG00001479 mRNA downstream 532483 5403225 ~ 5413536 (+) True AMCG00001479
TU198750 other upstream 806789 4052997 ~ 4062290 (+) False AMCG00001430
TU198688 other upstream 988300 3875209 ~ 3880779 (+) True G157781
TU198685 other upstream 992806 3875209 ~ 3876273 (+) False G157781
TU198192 other upstream 2868151 1971881 ~ 2000928 (+) True G157369
TU197970 other upstream 4279779 587975 ~ 589300 (+) True G157196
TU199079 other downstream 510948 5381690 ~ 5383064 (+) True AMCG00001480
TU199165 other downstream 726515 5597257 ~ 5622676 (+) True AMCG00001486
TU199229 other downstream 999977 5870719 ~ 5871150 (+) False AMCG00001489
TU199235 other downstream 1027493 5898235 ~ 5900998 (+) True AMCG00001493
TU199345 other downstream 1523361 6394103 ~ 6395960 (+) True AMCG00001509

Expression Profile