RNA id: AMCG00001470


Basic Information

Item Value
RNA id AMCG00001470
length 702
RNA type mRNA
GC content 0.58
exon number 2
gene id AMCG00001470
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 5249374 ~ 5250444 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGAGATCAGAGAGAGCCGACCATGGTGCCCAAATCCACTTCGTTTAGTATCAAGAGCCTGCTGCTGCCTGCGAAATGTGACAACCCAGGCTCGGGGGCCCCGGAGAAAAGGACTCTCCCTCCAGGGTCCGAGTCGGGGACATCTCTGGATCCCACGGACATGGAAACGCGCTCAGCCACGTCCCGGGGCAAACTGGCGATGAAGAGGGGGCTCCGCTTTGCGCCGCTCGGGCTGGGCTTGAACGAGCGGGCGAGTAACCCTTTGTATTGGCAAATCTCGCCATTTTTATCCTTGCATCACCCGCATTATAACGGATCTACAGCTGGGTTTCTGAATCAGGGCCATGCGTACGGATCCATACTTTCCGGAGTTGAGCAACTGGGCAACGGGGACCTGACGCGGCCGATTCTGGGGGGATCTGCCGGGGGCATCGGTCTCACGAACGGTTACGGTGTCAACACGTCTCCCGTTGGTTTGCTGTCCGGACAAGCGGGCTATTTCGTCTCAGGGACCCAGCACACACAAGCCCTCTCGCAGAGTGGGGCTGGTTTCGGGGTGCCTTCCAGCTCGTCCCCCACTCTTCTCTCAGAGACCCTCAGGACTTCCTTGCCCTCCTTCACGCCAGGTGTTTCCACGGGATTTTCGGGAGTCATATCCCATCCAAACAGAGTTGCACCTGCCAACACTTTTCTAAACTGA

Function

GO:

id name namespace
GO:0097458 obsolete neuron part cellular_component
GO:0001917 photoreceptor inner segment cellular_component

KEGG:

id description
ko04744 Phototransduction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198982 lncRNA upstream 361022 4888114 ~ 4888352 (+) True G158014
TU198941 lncRNA upstream 374230 4872695 ~ 4875144 (+) True G157985
TU198946 lncRNA upstream 374230 4872695 ~ 4875144 (+) False G157985
TU198925 lncRNA upstream 535214 4713895 ~ 4714160 (+) True G157975
TU198915 lncRNA upstream 546513 4696554 ~ 4702861 (+) True G157966
TU199069 lncRNA downstream 62624 5313068 ~ 5315236 (+) True G158089
TU199073 lncRNA downstream 115561 5366005 ~ 5367069 (+) False AMCG00001480
TU199086 lncRNA downstream 171027 5421471 ~ 5423092 (+) True G158104
TU199168 lncRNA downstream 343236 5593680 ~ 5622676 (+) False AMCG00001486
TU199182 lncRNA downstream 457648 5708092 ~ 5734559 (+) True G158184
AMCG00001460 mRNA upstream 309551 4914851 ~ 4939823 (+) True AMCG00001460
AMCG00001459 mRNA upstream 363771 4876148 ~ 4885603 (+) True AMCG00001459
AMCG00001462 mRNA upstream 378632 4869079 ~ 4870742 (+) True AMCG00001462
AMCG00001461 mRNA upstream 382490 4802172 ~ 4866884 (+) True AMCG00001461
AMCG00001463 mRNA upstream 469588 4770617 ~ 4779786 (+) True AMCG00001463
AMCG00001480 mRNA downstream 116588 5367032 ~ 5382584 (+) False AMCG00001480
AMCG00001479 mRNA downstream 152781 5403225 ~ 5413536 (+) True AMCG00001479
AMCG00001478 mRNA downstream 215452 5465896 ~ 5468938 (+) True AMCG00001478
AMCG00001475 mRNA downstream 230840 5481284 ~ 5486455 (+) True AMCG00001475
AMCG00001476 mRNA downstream 240882 5491326 ~ 5502268 (+) True AMCG00001476
TU198750 other upstream 1187084 4052997 ~ 4062290 (+) False AMCG00001430
TU198688 other upstream 1368595 3875209 ~ 3880779 (+) True G157781
TU198685 other upstream 1373101 3875209 ~ 3876273 (+) False G157781
TU198192 other upstream 3248446 1971881 ~ 2000928 (+) True G157369
TU197970 other upstream 4660074 587975 ~ 589300 (+) True G157196
TU199079 other downstream 131246 5381690 ~ 5383064 (+) True AMCG00001480
TU199165 other downstream 346813 5597257 ~ 5622676 (+) True AMCG00001486
TU199229 other downstream 620275 5870719 ~ 5871150 (+) False AMCG00001489
TU199235 other downstream 647791 5898235 ~ 5900998 (+) True AMCG00001493
TU199345 other downstream 1143659 6394103 ~ 6395960 (+) True AMCG00001509

Expression Profile