RNA id: AMCG00001500


Basic Information

Item Value
RNA id AMCG00001500
length 4159
RNA type mRNA
GC content 0.41
exon number 6
gene id AMCG00001500
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 6185200 ~ 6191972 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gATTCTCCAGGACTTCCTCCCCCTACAAATGTGTCCGTGAGCTGCCACAATTTAGAAACTGTTCTGCACTGGGACTACAGCCCTGCCACGCCAGATCCAGTGTTCACCGTGGAACTCTTAAGATATAACGAAGGAGACTGGAAACCAGTCTCTGGATGCAACAGGATATCCAAATGGCAATGTAATGTCTCCTCTTATATCACTGAAGTTGAAAACACCTACAGTCTGAGAGTTAAAGCAGCTGAGGGATCAGCTGAATCGAAGTTTGAAATGATTCCAGAATTTTTCACCTACAGTATAAGATATGAGGGAAAGCTCTGCACATGGGATTTCCCAGCTGTCAATGTTACAGCACATGGGAAAGACATCCATCTGCAGTTTCCTCATCCCCGTGAAATATATAAAGGAAGAAACCtaactttgaaaaaatataaaggactggaatacaaagtgcagtatTGGAACGAGAGTCACCATAAGatGGGGTTTGAGTGTGCTTTTGATAAGGCCCACCCAATATGTGAAAGGAAATTTTCAGTTAGTGAAGAGCGAGACAGACACTGCTTTTCTCTAAGTGGCACCATGGGATACAACATTGTTCTGGATGAGACTCAGGCCATATGTGTGGATGGAAAGCCCAAAAAACCTGTACTTGATGCAACTAAAATTACAATCATAGTGGTCAGCCTTactgctgctgttttaatttttttgtttgtgactGGATGGATCATTTTCCGGCGTCTGACGATGCAACCCACCTCTGTGCCCAAGTCTCTGGTATCAATGCTGACAGGAAATAGGGCAGGAGGCAGCACCATAAGGAATGAGCATGAGGATATTTCGGAGGTGCGTACCATTGGAACCTCCGAGAGTGCCCAGAAGCTGCTCTATGAAGATGCAAAGACCCCCAGCCCCAGCAGCCCCTCATCAGATTGTGTCCGCTGTAAGATCGGCCAGGAGAACTTTGAGGAATCCAGCGGCAGCTTGATGGTGGACTTGCCAGAAAACCCCAACGTCATCTCTGCCGTGACTGTGGATGCCAAGACCACTCTACCGTCAGACGTGTCCGGCAGCGGCGGTCCAGGCAGAGAGGACAGCGGCAATTGttctttcttcccctcctctgGATACGATAGACCCCAGGTGCTTCAGGTGGAACTGAGCCCTGGAGACACGGTGGAGGGGTATCGCGTGGCCCAGCTGTGAGAGTGCAGAGACCAGCTGTAGTTGTCAGTGACTAGGTTTCTTAAGGCAAGTCCTTAGTGACTAACATACACGCATGTCAACAATGTAGTCTGCACTGTCGTATTGTAATGAGTGTCCATGCCTACTTTGAAAGCTGATAAAGCAGAACACTTTAAAGGTTTGGGCAAACGGGCATCTTTTGACTGCCACAAGAGGGGTCATAGCTTTTGCCAGCTTGTTGTCTTATGTTGCCAGCCTTGTCAACATGCCAGCAGCCACATGGCAACACCCCAACAAGATGGTGtcaattttatttgtcttttggCACTACTTTGTCTGATGGCAAGCAAAGACAAAATACCCTTATGAGCAAGCTGGCTCATTTTTGTGCTGTGAATTTCTGAATGTAAGAAAAGGTATGGATTAGGGGTGACTGTTCAGCCTGATCTGTGGGTTCCTACTAGCTAACATTTCAAAGCTCGCAGCAATGTTTTTTATGAAGCATCTCAAGGAATCAGCTTCCCCAGTACCCCTCGGGATGGGAACTTCTAGACAATCGATCAATTAACCTGAACAATGTTCCGTTATAATTGAGTTGCAGATGTTCAAAGGCCTGAAGTCAGTGGAGTTCCCTAAAAAATACTTCAACCCACAAACCCACAACCCCACTGTGCAACTTACCTTTCAAATCAGAAATTCATAATGTTACATATGTCCCATATCTGCTGCAGTTATCTAGGTCTTGATTGGGTCTTGACAGTTTGGACACCCTTAGAGGTGAACACAGTGACAATGCaatgtaatgcaatgcaaaGCTTGGGCTCTGTTTGGAGAAAGAGCTGTGAAACTGCACCTTACCTATTTgccaaatatacatttatacagtaATCCCTCACCAACCGCGGGGTTACGTTTTTGATAACCCCTGTGGTCGGCAAAACCGCGTTTGGTAAATACATGAGAAATTGGGGGTTTGGATCTTCACAGTTATACTTATCAAAACCTGAAGCTGCAATTTCCTGCactaaacacaaatgaaaaacagtaacataaaaacaacacagagactAGAACATACTGGGTAATGCAACATgtgaaaaaagtaatacaattataacatAAAAGGCAtagttttatttacttatcGCACATTTAGGGGCCATGATTGCAACACTGCAAAATCACAATTGTGCTACGCTGACACGGCGGGAGACAATGCCAGGAGGGTTTGGTGCTGACGAGCTAGGAgtgcagaaaaatacaaacgATGGTGTGGAAGCAAATGCGTAATATGTGTCTATGAAAATCTGCTTATACACTAGGGATGAGACCGATCAGTCGAACATTTGACTTTTCATTAACGATGCCAACATTTAGGTCCCTAAATCAGAAACAGACATTAACAGGGCATTCGAAACCAGGAGAGGGAACTTATtggttaatttgttaatttccaACATAATCAAGTGAACAGATGCAGAAGGTTGTAAAAGGAACAATCCAGCATTCgagggggaggaagaaaaatgtatctgttgaTTTTAGTTTAAAGCCTGTTCTGTTGAGTGCCTCTCTGTGTAGAGCTAATGAAGACTGAatggagggtgggatttgttgtctgtgattggctagaATGTGCCTTGACTAACGATGGCTTCTTCACAGAAAAGaactgcatggaaatactttgacaaagtaaatgaaaacacttaagTATAAAATATGCGCAGTGCAATTTAACTACCATCATCAGCTGTATATTAACCCAcctaaaaataactgaatacaataaaaaaaataaaaaaaaagtgctgtggTCAGTTAGATGTCAACCTTAATagataattttaaattgtaattaacgGAAAACGTTGTGACAATATCGGGGAAAAAATAACGCAAAATACGAGAGCAACACGAGATCTGTGAGAGTTTACAGGTAATGATTATTTCTGTATGTCTTAGGAAGGTATTTATTACATAgcttaatgtttattaatgtttgtattgtgttagctaagtattttaaaataaagttcaggaATGATTGCCACTTTGCACTATTTCGTTTTTAATGTACGTCTCATTTTGAATGTGGGGGCGACTACTCGAATAGTCATCGACAACAGCTGAGGAATTATCGAAAGTCATAATGTAATTAACAGATCTAATACTGCGGTTGGCAAATTGGTGTTCAAAAGGAAAAACGTATACATGAATTCCACGGTTGGCAAATATGTGTTTGGCAAGTGATTACTGTgcgtaatatatatatatttttaaacatcattACTGTTGCTGAGAAGTCTGAAGAAAGTACTAATGTGGAGAGTTTCCATTTACAGAGCCTGCTTTTCTGTTATGCATGTTTCCTGTGTACAGTGACGAACCATTCTAACTATACAACAACTACAGACTAATTCACTGATAGTCActtctcaaatacattttccgTCAAAGACttgtgtacaaaaataaataagttgtcTGAGCTCAGTAAATCAATTTTGCGtgatgctttttttatttatttgcaagcaTTAAGCCAAGAGGGAATGTTTATTGTCACTGCAATAAATCATTCTGGATCTACAAGCATTTGACATTGTGTTACGATAGCACACTTTTGACCAGAAATGAATCTATTATAAACTGTGCAAGTGCGGTTGGGATTTAGGGAAAACAAGCATTCATATAAAAGCGTCACCGCTGTGGGTTTTGAATATGTGAATCAAGTCCTTACACTATCACCTGTGTACATGAACGAGAATCAATAGACCAGACTTCCTGTTCGTGTTGCATAACCTTAAATTCATATTTCTTCCAGTATGACCTCGCTTACAGTCAGTTACCTGAATAGGATGGCTTTCGGTTTCTATGCCAGTAAAGCATTTTTGCAGATACAGGTATACAAGTCATCTTGCCAGGGTTGTTTATTTGGACCAGTGCTTTAGGTCACTGTCTCTCATCC

Function

GO: NA

KEGG:

id description
K05132 IFNGR1, CD119; interferon gamma receptor 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199234 lncRNA upstream 292954 5892046 ~ 5892246 (+) True G158230
TU199182 lncRNA upstream 450641 5708092 ~ 5734559 (+) True G158184
TU199168 lncRNA upstream 562524 5593680 ~ 5622676 (+) False AMCG00001486
TU199086 lncRNA upstream 762108 5421471 ~ 5423092 (+) True G158104
TU199073 lncRNA upstream 818131 5366005 ~ 5367069 (+) False AMCG00001480
TU199346 lncRNA downstream 204948 6396920 ~ 6398188 (+) True G158332
TU199355 lncRNA downstream 217049 6409021 ~ 6410557 (+) True G158337
TU199361 lncRNA downstream 230028 6422000 ~ 6422235 (+) True G158342
TU199387 lncRNA downstream 317322 6509294 ~ 6509630 (+) True G158364
TU199470 lncRNA downstream 595432 6787404 ~ 6788972 (+) True G158435
AMCG00001497 mRNA upstream 98860 6085600 ~ 6086340 (+) True AMCG00001497
AMCG00001498 mRNA upstream 183573 5990262 ~ 6001627 (+) True AMCG00001498
AMCG00001493 mRNA upstream 284379 5889836 ~ 5900821 (+) False AMCG00001493
AMCG00001489 mRNA upstream 313770 5869975 ~ 5871430 (+) True AMCG00001489
AMCG00001488 mRNA upstream 358705 5819606 ~ 5826495 (+) True AMCG00001488
AMCG00001501 mRNA downstream 2290 6194262 ~ 6198251 (+) True AMCG00001501
AMCG00001510 mRNA downstream 34023 6225995 ~ 6253221 (+) True AMCG00001510
AMCG00001511 mRNA downstream 189995 6381967 ~ 6383208 (+) True AMCG00001511
AMCG00001509 mRNA downstream 203032 6395004 ~ 6395264 (+) False AMCG00001509
AMCG00001512 mRNA downstream 349701 6541673 ~ 6545924 (+) True AMCG00001512
TU199235 other upstream 284202 5898235 ~ 5900998 (+) True AMCG00001493
TU199229 other upstream 314050 5870719 ~ 5871150 (+) False AMCG00001489
TU199165 other upstream 562524 5597257 ~ 5622676 (+) True AMCG00001486
TU199079 other upstream 802136 5381690 ~ 5383064 (+) True AMCG00001480
TU198750 other upstream 2122910 4052997 ~ 4062290 (+) False AMCG00001430
TU199345 other downstream 202131 6394103 ~ 6395960 (+) True AMCG00001509
TU199525 other downstream 682796 6874768 ~ 6876578 (+) True G158478
TU199601 other downstream 831416 7023388 ~ 7028141 (+) True G158537
TU199730 other downstream 1479342 7671314 ~ 7679783 (+) True AMCG00001550
TU199732 other downstream 1479342 7671314 ~ 7679783 (+) False AMCG00001550

Expression Profile