RNA id: AMCG00001507


Basic Information

Item Value
RNA id AMCG00001507
length 1560
RNA type mRNA
GC content 0.58
exon number 8
gene id AMCG00001507
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 6563808 ~ 6591290 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGGAGTGCGGGCGGAAGGCGCTGTCGCTCCTGGAGGCGGCCCGCTCCCGCTACGAGAGCCTGCAGATCTCCGACGATGTGTTCGGGGAGTCGGGGGACGACAGCAGCGAAAACCCCTTCTACAGCACCTCGGGGGACTCCAACTCCGACAATTACGCCTCGGAGAGCAATGCGGACGAGCAGAGGGCAGGGGACAGCGGCGGCGGCTGCCCCCCCGGAGGTCCCCCCGGCTCCGTGTCCAACACCCAAGCCGAAGAAGAGGGCTGGAGCGATGTGTTGAGAGACATCACGGTGCCCCCTTACAAAGATACCTATGGCCCCGCGCAGAAGATGCCAGCGACCGCGAGCGCGATGGACTTCTTCCAGCTCTTCGTCCCGGACAACGCCATCCAGAACATGGTGACGCAGACGAACATGTACGCCAAGAAATACCAGGAGCGGTTCGGCAGCGACGAAGGCTGGTGCAACGTCACCCTGTCGGAGATGAAGGCCTTCTTGGGCTACGTCACCTCCACCAGCATACACCGCTGCGAGTCGGTGCTGAGCATCTGGAGCAGCGGCTTCTTCAGCAACAAGAGCATCGCGCTGATCATGACGCAGGCCCGCTTCGAGAAGATCCTCAAGTACTTCCACATTGTAGCCTTTCGCTCCAGCCACAGCGGCCAGGGCCTGTACAAGATTCAGCCCTTCCTCGACTCGCTGCAGCAGTCCTTCGGATGTACGTTCAGGCCATCTCAAACCCAGGTGCTGCACGAGCCACTGATCGATGAAGACCCCGTCTTTATCGCAACTTGCACAGAACGCGAACTCCGGAAGAGAAAAAAGCGGAAATTCAGCCTGTGGGTCAGGCAGTGCACGGCGACTGGCTTTATCTGCCAGatttacgTGCACCTGAAGGAAGGACCGGGCCCTGATGGGTTGGACACCTTGAAAAACAAGCCACAGCTCCATAGTTTAGTGGCCAAACAGCTGTGTCAGAACCTGTCCGGCAAGAACGCCATCATTTTCACCGGTCCCAGCATCACCAGCCTCAATCTGTTTGAGGAGTTCGAGAAACAAGATATCTACTGCTGCGGGCTGCTCAGCTCCAGGAAGAGTGACTGCACCGGCCTGCCCCAGTCCATGCTGGCCAACACCGAGTTGCCCCAGCGGCGAGGCCAGTACCAGACCAAAATGAAGCGCAACATGTCGCTCATATGCTGGTACAACAAGGGCAACTTCCGCTTCCTCAGCAACGCCTACTCCCCCAGCAAACAAGGAGTCATAATTAAACGGAAGAGCGGAGAGATCCCCTGTCCCTTGGCGGTGGAGGCCTTCGCGGCGCATCTGAGCTACATCTGCAAGTACGACGACAAGTACAGCAACATAGCCATCAACAACGCCTATATCCTGTACAAGATGTCCGACGCCTACCACATGAAGCGCTACAGCCGGGCGCAGTTCGGAGAGAGACTGGTGCGAGAGCTGTTGGGCCTGGAGGACTGCTCGCCCACACGcagGAAAAGGAGACCAGAACATTCCTGTGAATTTTGCAGGCCCAGCAAACCCCACTCGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199387 lncRNA upstream 54178 6509294 ~ 6509630 (+) True G158364
TU199361 lncRNA upstream 141573 6422000 ~ 6422235 (+) True G158342
TU199355 lncRNA upstream 153251 6409021 ~ 6410557 (+) True G158337
TU199346 lncRNA upstream 165620 6396920 ~ 6398188 (+) True G158332
TU199234 lncRNA upstream 671562 5892046 ~ 5892246 (+) True G158230
TU199470 lncRNA downstream 196114 6787404 ~ 6788972 (+) True G158435
TU199603 lncRNA downstream 436897 7028187 ~ 7036066 (+) True G158539
TU199613 lncRNA downstream 464558 7055848 ~ 7056061 (+) True G158548
TU199625 lncRNA downstream 566960 7158250 ~ 7160609 (+) True G158555
TU199643 lncRNA downstream 578243 7169533 ~ 7169767 (+) True G158571
AMCG00001512 mRNA upstream 17884 6541673 ~ 6545924 (+) True AMCG00001512
AMCG00001509 mRNA upstream 168544 6395004 ~ 6395264 (+) False AMCG00001509
AMCG00001511 mRNA upstream 180600 6381967 ~ 6383208 (+) True AMCG00001511
AMCG00001510 mRNA upstream 310587 6225995 ~ 6253221 (+) True AMCG00001510
AMCG00001501 mRNA upstream 365557 6194262 ~ 6198251 (+) True AMCG00001501
AMCG00001515 mRNA downstream 144807 6736097 ~ 6741940 (+) True AMCG00001515
AMCG00001517 mRNA downstream 152415 6743705 ~ 6752893 (+) True AMCG00001517
AMCG00001518 mRNA downstream 162441 6753731 ~ 6770900 (+) True AMCG00001518
AMCG00001519 mRNA downstream 181206 6772496 ~ 6776686 (+) True AMCG00001519
AMCG00001516 mRNA downstream 188372 6779662 ~ 6787020 (+) True AMCG00001516
TU199345 other upstream 167848 6394103 ~ 6395960 (+) True AMCG00001509
TU199235 other upstream 662810 5898235 ~ 5900998 (+) True AMCG00001493
TU199229 other upstream 692658 5870719 ~ 5871150 (+) False AMCG00001489
TU199165 other upstream 941132 5597257 ~ 5622676 (+) True AMCG00001486
TU199079 other upstream 1180744 5381690 ~ 5383064 (+) True AMCG00001480
TU199525 other downstream 283478 6874768 ~ 6876578 (+) True G158478
TU199601 other downstream 432098 7023388 ~ 7028141 (+) True G158537
TU199730 other downstream 1080024 7671314 ~ 7679783 (+) True AMCG00001550
TU199732 other downstream 1080024 7671314 ~ 7679783 (+) False AMCG00001550
TU199779 other downstream 1145225 7736515 ~ 7737890 (+) True G158672

Expression Profile