RNA id: AMCG00001510


Basic Information

Item Value
RNA id AMCG00001510
length 6075
RNA type mRNA
GC content 0.52
exon number 33
gene id AMCG00001510
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 6225995 ~ 6253221 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGCTCGCAGGTGGTGCAGACTCTCCGGCAGGGCGTCTGGGCATCCCTGACCGGCGGCTGGTATCACGACCCAGAGCAGGACAAATTCAATAACTCCTGCCATCTCTATCTGTGGATATTTCTGCTCATGTTACCGTTAACCCTTCACCTGGTGAGTACAGCTTTCATATGCAAACTGGGCATCATGGCAAGCCTCCTGGTCACCGTGTTTTTCGTCCTGATTAAGATGGTCAATTATCGTCTCCATCTGATGTTCGACGAGGGCGAAATTGCACCGCAGAAAAGCCCGTCGGATGTGAGCAGAGCTGAGGAAAAGAAGAGCAATGCTTCAGATCCATGCCTTCCACCAAGCCTGAGAAAGAGCAGTACTGCAGCCGAAGATGTTGCCATGATTGAACTGAACCTCAACAGACAAAGCCCCGTGGTCCCCgatgcagagaaacacagagagatagCAGTCTTAATGGCAGTTACACTGAGTGAAATGCCATGTCAGGAAACTGATAGTGGGATGGAGCAGTTGGCTTCACTACATGAAGATAAGTCTGTCACTGACAATCTTTATAAAGACCTGCAAGATCCTAAAGTGGTCCAGGAGAGCCAGGCGAAGGAATGCACCCTGCTTGATGGGAATCCCACCGTTGGAGGAACTTCACCTCAAATAGAAATTGACCTGAAGGCTGGGGAAGAAAAGCTGGAACATAAACCGGAGCAAGACCAGAACAATAACTCTCTTGAGATGAGCCTGGACCAATGTGGCCCACTGCCCGTCCCAAAAGACAACAGTTATGAGGAGAAATACTGCTCTGATGAAATCGCGGTGGTTCTCGTGGACAATTCCAATCCCTCCATTCAGATTGATGACAACGACACGGTGAAAATCATCATAACCATGAGCTGCGACGCTCAGACGGCCGCGGACTTGGAGGAGTCGGTGAAGCAGAGCATTTTGGAGTCTGCCCAGGCACAACTGAATCTAGACACAGGGGAACGGCAGGGCAACGCCGGCAATGAAGGCTTCGTGAAGATACCTGTCATTACATTCAACTTGCCTGAAGACAACACATCTTTGCCTAATGAAGATGCCAGCCAGCCTCTGCCCATGCCTGAATTGAATGTATCAAAAGAGCTGGTCAGTTCGGACTCGGCTGTCCAGGACTGCAACGAGAAGGGGCACCTCAGCGTCCAGATGAACACGACGAATGAAAACAGCTCCTCTGGAATCGATTCGCAAGTTGGCTCACAACCAGATATTAACAATCCCTCCTCGCAGGAGCTGAAATCGGATGATGACGTCTTTTTGCAGATCCCATCCAAGCACGAGAGAGGGGGCGCTAAACCCACTGGCGGGCCAAGAACTCACACCAGGGGCCTCAGCATGGACAGTGGGACAGACGCCCTCCTGAGCGCAAACAGAGCCCAGGACGAGTCGAAGACCATGACATCGTCCAAGTCCGACTTGGAGGCGAAGGAGGGTCAGATTCCCAACGAATCCAACTTTGTGGAATTTGTTTCATTGCTGGTGTCCATCAACAGCACCCGGAGTAGCGGCAGCAATCAGACGGAAGTGGCAACTGAGCACGGAGGAAAGGCAGCTGATCAAGACAGTATAACAGCAATGAAAAATGATGAAGAAATGGAAACAGAAGGCCAACAAGAGCTTACCAACCCACCTAACAGTTTAGTGACCACAGACACTCCCCACACAGTTTCTGAAAAACCAACGCCCATTGTCTCTCCGGAGAGTCCTCAGGGAGAAAAGGATAAAGAGCCTGACTATGACTCCCTGCCTTCTCAGACCTCACAGTCGGAAAGCTCGATGTTGCAAGTTATATGCAGACCAGAAGCTACCTCTAAAGAAGAAGTTTACACTTTTAACACAGTTCACAGAGAAAGGCCCCGTAAACTCTATGCGGAGAGAGCGTTGAATTTGCCGCTAGGAGCAGAACTCATTACTGGTAATATCGATCTCCTGTCCACCTCCTCCAACTCCGAGTGCCAGGAGAGGCCTGTCGTGGGCCGCCCTGTTGTGGGCCGAGTTGAATGCCCGCTCCAACACTGCATCATCCCAGGGCAGAGACTGCGGCCACCAGGGGGACACACAGAAATATTTCAGGAGGAGGACTCCATTGATGAATCTTCAGAGACTTCAATACAAGAGAAACCCATTCGCAAAATGTACTACAAGTTTTGGGTTTTTCCTGGGAAATGGATAAACATCTTATATGATCGGCTTACTTTATTGGCATTGTTGGACAGGAATCAAGATGTTCTGGAGAACATGGTAGCTGTGTTTCTCGCATTCCTGGTTGCCTTCCTTGGGTTTATACTGTTGAACCACGGCTGCTTCAAAGACTTTTGGGTTTTCCAATTCTGCCTGGTCATCGCCAGCTGCCAGTACTCCCTGCTGAAAAGCGTCCAGCCCGATGCAGCTTCCCCAACTCACGGACACAATCAGATTGTCGCCTACAGCAGAGCTgcctatttttgtattttctgtggcCTTATTTGGTTGTTGGAGTTGGTTCTGGAACGGCAGGACCTTCCAGTTTCCACAATGTATGGCGTGAGAATAATTTCACCAGATGCTCTTACATTCATAAGGGATGTTTTAATAGGATTCACCCACTGTTTCCCAATTATATTTCTGGTGGGTTTGCTCCCCCAATTCAACACCTTTCTGATTTACCTGTTGGAGCAAATCGACGTGCATTTCTTTGGTGGAACTGCTGCCACAGGCCTGACTTCAGCTTTCTATGGCTTATTGCGCAGCCTGATTGCATTGGCTGCACTTTATGGGTTTTGCTTCGGAGCCCTGAAGGAACCATGGGACGATCAACACATCCCAGCATTGTTTTCTGCCTTCTGTGGCCTTCTAGTCGTGTTTTCGTATCACCTCAGCCGGCAAAGCAGCGACCCTTCTGTGCTGCTATCTCTTATGCAGTCTAAATTGATGCCTGATTTAAAGGACTCTAAAGTTGAGGATCCCACACAGGAAAACCATGATCCTCTTCCAGGGAAGCTACGCAGTTCAGTGAGAGAAACGCTTCATTCTGATCTGGTCGTGTGTATGATAGCTTCGGTTTTGACTTTTGCAATAAGTGCCAGCACTGTGTTTTTATCACTAAAGCCCTTTGTCACCATTGTGCTGTACACCTTAGCGGGGACTGTGGGATTTGTCACCCACTACCTGATCCCTCAGCTGAGAAAACACCACCCCTTTCTCTGGATATCTCATCCCATCCTCAAAAGCAAAGAATACACGCAGTACGAGCCAAGAGACCATGCCCACCTGATGTGGTTCGAACGCCTCTACGTGTGTCTCGTCTGTTTCGAGAAGTACGTCATCTACCCAGCCATCATCCTGAGCGCCCTGACCAACGACGGGTTCTCTCTCAGCCATCGTGAACGGCTCGGTATACACTGTGATGTCTTGTTGATGACAGTTGCTGGGATGAAGCTGCTGCGATCTTCCTTCTGCCATCCCAGTTTCCAGTTTGTCACACTGGTTTTCACCATCGTCTTCTTCGAGTTCGATTACAGCTCGGCGTCGGAGAGCTTCCTGCTGGACTTCTTCCTGATGTCCATCGTGTTTCATAAGGCAAGTTGGTGCCATTACATGATTATTAAGGCGACTCCTGTGGAGCTCTGGGATCTTCTGCACAAGCTACACTTCATCCTGGTGTACATCGCTCCTTGGCAGATTGCTTCAGATTCAGCCATGCTTTTACTCCAGACCTTTGTGACCACACTTTTCTATACCCCACTCACCCCTTTTCTGGGCAGCGCCATCTTTATCACATCATACCCCCGGCCAGTAAAATTCTGGGAAAGAAATTACAACACCAAACGGATAGACAACTCAAACAGCAGACTTGTATCTCAGATTGACAAAGATACAGgatGTGATGATAACAACCTCAATTCCATTTTCTATGAATACCTCACGAGATCTCTCCAGCACTCATTGTGTGGGGACTTACTGCTGGGCCGCTGGGGAAACTACAGTTCAGGAGACTGCTTCATACTGGCTTCGGATTACCTGAACGCCTTTGTGCATCTGATAGAAATTGGGAACGGTCTGGTTACGTTCCAGCTACGAGGTCTGGAATTCAGAGGCACATACTGTCAGCAGAGAGAAGTGGAAGCCATCACAGAAGGCGTGGAGGACGATGatgcctgctgctgctgtgaacCCGGGCACCTGCCCCACGTCCTGTCCTGTAATGCGGCCTTTAACCTCCGCTGGCTCGCCTGGGAGGTCACCACGACCAAGTACCTCCTGGAGGGCTACAGCATCAGTGAGAACAATGCCGCCACCATGCTGCAGGTGTATGACCTGAGGAAGCTCCTCATCACCTACTATCTCAAGAGCATCATCTATTTCCTGCTCCACTCCCCTAAACTTCAGGACTGGCTGAAGGAGCCTTTGATACACGAGGTCCTCCAGGCATACACCAAATGGCATTATATTGAGAGGGACCCGGCGGTGTTCAGTGTCAAAATTGACGAGGATTACGTCCATTGCCTACAAGGCATAACAAGGGCCAGTTTCTGCAATGTTTACCTGGAGTGGATTCAGTACTGCATCAGTAAGCAAGATGAGCCCATTAACAGTGACGAGGACTCACCTGTTATCACCCTGTGCTTCGCCCTCTCTGTACTTGGACGAAGGTCGTTAGGGACGGCTTCACACAACCTGTCCAGCAGCGAAGGACGAATGGGTTTTCGTCGACATGGACCTGCTGCAGAAGGTCTTGGCTCCAGCCGTGAGGATGAGTTTAAAGCTCCACCAGAGGAAACAGAGGACCCTGCGATTCTCTACGAAGCCATCAGTAACTATGAGAAGACTCTGGTCATTTGTCACGAAGGAGACCCAGCATGGAGGAAAGCGGTGCTGTCCAGCCGAGATACGCTGCTCACTCTGAGGCACATGGTGGACGATGGGACCGACGAATACAAGATCATTATGCTATACAAGCGCCAGCTCAGCTTCAAAGTTATTAAGATCAATAAGGAGTGTGTCCGGGGACTGTGGGCTGGCCAGCAGCAGGAACTCGTGTTCCTCCGCAATCGAAACCCAGAGAGAGGCAGCATCCAGAACTCCAAGCAAGCTCTGAGGAACATGATCAACTCGTCATGTGACCAGCCACTAGGCTACCCCATGTATGTGTCACCCTTGACCACGTCATATATGGGCACCCACAAACAACTGCAAAGCATCTGGGGTGGCCCCATCAGTCTGGAGAGCATAAGAACCTGGCTCCTTTCCAAGTGGTTAAGGGTGAGGAAAGACAACATCACGAGCTGCCACAGTGTGGGCAACATTGAAGATGTGGACTGCGGAGGGGGGTCCTCCTCTTTCAGTAACCACCACACCTCCAACACGTCCCAGAGTCTCAGCCGACACCACGGACGACCCCGGGGGCCACAGGCAGTGGGAACCAGGCAGCATGCGCCAGCCAGAAGAGAGTACAGGAGTCGCTCAGTGCAGCCTCAGAGCCCGAGGCCCCCAGTCACCAGCCAGTCGGGGCCCATCCTTGAGAGTCAGCAGGTGTTGACCTCTGGCAACGGCCTCGTCCAGAGACTCTCCAACAGCCAGCTGTCCTTCAACACCTCCATCGCCTCGGTCTTCTCCCAAGTGCCACGCTTCTCCACCGTGGGGCAGCTCAGCTCACAGATCCAGGCCGTGGCCCACCACCACTCTGGACAAGCCTCGTCCTCCAGCTCCACGCTCAGCTTGCTGTTCGGCAAGAGGAGCTTCTCCAGTGGCCTGGTCATCTCTGGCCTGTCTGCTGCCGAGGGCGGGAACACCACCGACACGCAGTCCTCCAGCAGTGTCAACATCGCCGTCGGCCCGTCTGCCAGGACCGGGAGCAGGGCCACACAGtggaCATCTGAGGCCTGCGAAAGCCTGGAAGCCACACAGTCTAGTCAACCAAACGGCCTCATGGGGCCCAAGGAAAATTCGGCATCGTATGAGAAAGACAACACAGACGGGCAGGAGAAGAGCCAAGAAGAGATGGCCTCGGCCCCCACTTTACAGACGCTGTCAGAGCACAAGGCGTCCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199234 lncRNA upstream 333749 5892046 ~ 5892246 (+) True G158230
TU199182 lncRNA upstream 491436 5708092 ~ 5734559 (+) True G158184
TU199168 lncRNA upstream 603319 5593680 ~ 5622676 (+) False AMCG00001486
TU199086 lncRNA upstream 802903 5421471 ~ 5423092 (+) True G158104
TU199073 lncRNA upstream 858926 5366005 ~ 5367069 (+) False AMCG00001480
TU199346 lncRNA downstream 143699 6396920 ~ 6398188 (+) True G158332
TU199355 lncRNA downstream 155800 6409021 ~ 6410557 (+) True G158337
TU199361 lncRNA downstream 168779 6422000 ~ 6422235 (+) True G158342
TU199387 lncRNA downstream 256073 6509294 ~ 6509630 (+) True G158364
TU199470 lncRNA downstream 534183 6787404 ~ 6788972 (+) True G158435
AMCG00001501 mRNA upstream 27744 6194262 ~ 6198251 (+) True AMCG00001501
AMCG00001500 mRNA upstream 34023 6185200 ~ 6191972 (+) True AMCG00001500
AMCG00001497 mRNA upstream 139655 6085600 ~ 6086340 (+) True AMCG00001497
AMCG00001498 mRNA upstream 224368 5990262 ~ 6001627 (+) True AMCG00001498
AMCG00001493 mRNA upstream 325174 5889836 ~ 5900821 (+) False AMCG00001493
AMCG00001511 mRNA downstream 128746 6381967 ~ 6383208 (+) True AMCG00001511
AMCG00001509 mRNA downstream 141783 6395004 ~ 6395264 (+) False AMCG00001509
AMCG00001512 mRNA downstream 288452 6541673 ~ 6545924 (+) True AMCG00001512
AMCG00001507 mRNA downstream 310587 6563808 ~ 6591290 (+) True AMCG00001507
AMCG00001515 mRNA downstream 482876 6736097 ~ 6741940 (+) True AMCG00001515
TU199235 other upstream 324997 5898235 ~ 5900998 (+) True AMCG00001493
TU199229 other upstream 354845 5870719 ~ 5871150 (+) False AMCG00001489
TU199165 other upstream 603319 5597257 ~ 5622676 (+) True AMCG00001486
TU199079 other upstream 842931 5381690 ~ 5383064 (+) True AMCG00001480
TU198750 other upstream 2163705 4052997 ~ 4062290 (+) False AMCG00001430
TU199345 other downstream 140882 6394103 ~ 6395960 (+) True AMCG00001509
TU199525 other downstream 621547 6874768 ~ 6876578 (+) True G158478
TU199601 other downstream 770167 7023388 ~ 7028141 (+) True G158537
TU199730 other downstream 1418093 7671314 ~ 7679783 (+) True AMCG00001550
TU199732 other downstream 1418093 7671314 ~ 7679783 (+) False AMCG00001550

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00011788 False 10823 mRNA 0.43 35 NC_007124.7 23669659 ~ 23735251 (+)
grasscarp (Ctenopharyngodon idella) CI01000012_13041401_13060443.mRNA True 6545 mRNA 0.48 32 CI01000012 13040652 ~ 13060443 (-)